Evidence map›Paper›PMID 28498870›Full record

ArticlePLoS genetics2017

Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition.

Gabriele Wagner, Nishant Singhal, Dario Nicetto, Tobias Straub, Elisabeth Kremmer, Ralph A W Rupp

Abstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Gabriele WagnerBiomedizinisches Zentrum, Molekularbiologie, Ludwig Maximilians-Universität, Großhaderner Strasse 9, Planegg Martinsried, Deutschland.
Nishant SinghalBiomedizinisches Zentrum, Molekularbiologie, Ludwig Maximilians-Universität, Großhaderner Strasse 9, Planegg Martinsried, Deutschland.ORCID http://orcid.org/0000-0002-7988-5125
Dario NicettoBiomedizinisches Zentrum, Molekularbiologie, Ludwig Maximilians-Universität, Großhaderner Strasse 9, Planegg Martinsried, Deutschland.
Tobias StraubBiomedizinisches Zentrum, Molekularbiologie, Ludwig Maximilians-Universität, Großhaderner Strasse 9, Planegg Martinsried, Deutschland.ORCID http://orcid.org/0000-0002-0547-0453
Elisabeth KremmerCore Unit Monoclonal Antibodies, Helmholtz Zentrum München, Marchioninistrasse 25, München, Deutschland.ORCID http://orcid.org/0000-0002-8133-8374
Ralph A W RuppBiomedizinisches Zentrum, Molekularbiologie, Ludwig Maximilians-Universität, Großhaderner Strasse 9, Planegg Martinsried, Deutschland.ORCID http://orcid.org/0000-0002-8068-9957

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Zygotic gene expression programs control cell differentiation in vertebrate development. In Xenopus, these programs are initiated by local induction of regulatory genes through maternal signaling activities in the wake of zygotic genome activation (ZGA) at the midblastula transition (MBT). These programs lay down the vertebrate body plan through gastrulation and neurulation, and are accompanied by massive changes in chromatin structure, which increasingly constrain cellular plasticity. Here we report on developmental functions for Brahma related gene 1 (Brg1), a key component of embyronic SWI/SNF chromatin remodeling complexes. Carefully controlled, global Brg1 protein depletion in X. tropicalis and X. laevis causes embryonic lethality or developmental arrest from gastrulation on. Transcriptome analysis at late blastula, before development becomes arrested, indicates predominantly a role for Brg1 in transcriptional activation of a limited set of genes involved in pattern specification processes and nervous system development. Mosaic analysis by targeted microinjection defines Brg1 as an essential amplifier of gene expression in dorsal (BCNE/Nieuwkoop Center) and ventral (BMP/Vent) signaling centers. Moreover, Brg1 is required and sufficient for initiating axial patterning in cooperation with maternal Wnt signaling. In search for a common denominator of Brg1 impact on development, we have quantitatively filtered global mRNA fluctuations at MBT. The results indicate that Brg1 is predominantly required for genes with the highest burst of transcriptional activity. Since this group contains many key developmental regulators, we propose Brg1 to be responsible for raising their expression above threshold levels in preparation for embryonic patterning.

Indexed as

Transcription, GeneticAdenosine TriphosphatasesAnimalsBlastulaCell DifferentiationChromatinChromosomal Proteins, Non-HistoneDNA HelicasesEmbryonic DevelopmentGene Expression Regulation, DevelopmentalGenomeMaternal InheritanceTranscription FactorsWnt Signaling PathwayXenopusZygoteAdenosine TriphosphatasesChromatinChromosomal Proteins, Non-HistoneDNA HelicasesSWI-SNF-B chromatin-remodeling complexTranscription Factors

Identifiers

PMID28498870
PMCPMC5428918

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.