Evidence map›Paper›PMID 28497977›Full record

ArticleAIDS research and human retroviruses2017

Effect of Amino Acid Substitutions Within the V3 Region of HIV-1 CRF01_AE on Interaction with CCR5-Coreceptor.

Sayamon Hongjaisee, Martine Braibant, Francis Barin, Nicole Ngo-Giang-Huong, Wasna Sirirungsi, Tanawan Samleerat

Abstract read
In one paragraph

Article in AIDS research and human retroviruses, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sayamon Hongjaisee1 Department of Medical Technology, Faculty of Associated Medical Sciences, Chiang Mai University , Chiangmai, Thailand .
Martine Braibant2 Inserm U966, Université François Rabelais , Tours, France .
Francis Barin2 Inserm U966, Université François Rabelais , Tours, France .
Nicole Ngo-Giang-Huong1 Department of Medical Technology, Faculty of Associated Medical Sciences, Chiang Mai University , Chiangmai, Thailand .
Wasna Sirirungsi1 Department of Medical Technology, Faculty of Associated Medical Sciences, Chiang Mai University , Chiangmai, Thailand .
Tanawan Samleerat1 Department of Medical Technology, Faculty of Associated Medical Sciences, Chiang Mai University , Chiangmai, Thailand .

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Specific amino acids within the V3 loop of HIV-1 CRF01_AE envelope glycoprotein that are involved in the interaction with CCR5/CXCR4 coreceptors, are not well characterized. We generated V3 mutants using polymerase chain reaction (PCR)-based site-directed mutagenesis of HIV-1 CRF01_AE R5-env plasmids at specific positions. Mutant viruses were produced by env-pseudotyped virus assay, tested for coreceptor usage using U373.R5 and U373.X4 cells, and viral entry was assessed with luciferase activity measurement. All viruses, harboring either single or double mutations, used the CCR5 coreceptor. However, those containing a single substitution at positions 7, 11, 18, and 32 and those with mutations at positions 5/32 and 18/32 had reduced infectivity. Only virus with arginine substitution at position 11 seemed to be involved in CXCR4 coreceptor usage. Our results suggest that some V3 positions may be necessary for the binding to coreceptor, but not for the switch of coreceptor usage.

Indexed as

Amino Acid SubstitutionCell Lineenv Gene Products, Human Immunodeficiency VirusHEK293 CellsHIV-1HIV InfectionsHumansMutagenesis, Site-DirectedMutationReceptors, CCR5Virus Internalizationenv Gene Products, Human Immunodeficiency VirusReceptors, CCR5CCR5coreceptor usageCRF01_AEHIV-1V3

Identifiers

PMID28497977
PMCPMC5576193

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.