Evidence map›Paper›PMID 28497210›Full record

ArticleCurrent microbiology2017

Genetic Characterization of Influenza A (H1N1) Pandemic 2009 Virus Isolates from Mumbai.

Devanshi Gohil, Sweta Kothari, Pramod Shinde, Rhuta Meharunkar, Rajas Warke, Abhay Chowdhary, Ranjana Deshmukh

Abstract read
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In one paragraph

Article in Current microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed, 1 pooled it
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 synthesis or guideline pooled it, 3 citations in OpenAlex.

  1. Pooled it
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Devanshi GohilDepartment of Virology and Immunology, Haffkine Institute for Training, Research and Testing, Acharya Donde Marg, Parel, Mumbai, Maharashtra, 400012, India. devanshi.gohil@gmail.com.
Sweta KothariDepartment of Virology and Immunology, Haffkine Institute for Training, Research and Testing, Acharya Donde Marg, Parel, Mumbai, Maharashtra, 400012, India.
Pramod ShindeDepartment of Bioinformatics, Guru Nanak Khalsa College, Mumbai, Maharashtra, India.
Rhuta MeharunkarMolecular Biology and Virology, HiMedia Laboratories, Mumbai, Maharashtra, India.
Rajas WarkeDepartment of Virology and Immunology, Haffkine Institute for Training, Research and Testing, Acharya Donde Marg, Parel, Mumbai, Maharashtra, 400012, India.
Abhay ChowdharyDepartment of Virology and Immunology, Haffkine Institute for Training, Research and Testing, Acharya Donde Marg, Parel, Mumbai, Maharashtra, 400012, India.
Ranjana DeshmukhDepartment of Virology and Immunology, Haffkine Institute for Training, Research and Testing, Acharya Donde Marg, Parel, Mumbai, Maharashtra, 400012, India.
Haffkine Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pandemic influenza A (H1N1) 2009 virus was first detected in India in May 2009 which subsequently became endemic in many parts of the country. Influenza A viruses have the ability to evade the immune response through its ability of antigenic variations. The study aims to characterize influenza A (H1N1) pdm 09 viruses circulating in Mumbai during the pandemic and post-pandemic period. Nasopharyngeal swabs positive for influenza A (H1N1) pdm 09 viruses were inoculated on Madin-Darby canine kidney cell line for virus isolation. Molecular and phylogenetic analysis of influenza A (H1N1) pdm 09 isolates was conducted to understand the evolution and genetic diversity of the strains. Nucleotide and amino acid sequences of the HA gene of Mumbai isolates when compared to A/California/07/2009-vaccine strain revealed 14 specific amino acid differences located at the antigenic sites. Amino acid variations in HA and NA gene resulted in changes in the N-linked glycosylation motif which may lead to immune evasion. Phylogenetic analysis of the isolates revealed their evolutionary position with vaccine strain A/California/07/2009 but had undergone changes gradually. The findings in the present study confirm genetic variability of influenza viruses and highlight the importance of continuous surveillance during influenza outbreaks.

Indexed as

Genetic VariationAmino Acid SubstitutionAnimalsDogsEvolution, MolecularGlycosylationHemagglutinin Glycoproteins, Influenza VirusHumansIndiaInfluenza A Virus, H1N1 SubtypeInfluenza, HumanMadin Darby Canine Kidney CellsMutation, MissenseNasopharynxNeuraminidasePhylogenyH1N1 virus hemagglutininHemagglutinin Glycoproteins, Influenza VirusNA protein, influenza A virusNeuraminidaseViral Proteins

Identifiers

PMID28497210
OpenAlexW2613975496

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.