Evidence map›Paper›PMID 28495957›Full record

ArticleGenetics2017

Resolving the Complex Genetic Basis of Phenotypic Variation and Variability of Cellular Growth.

Naomi Ziv, Bentley M Shuster, Mark L Siegal, David Gresham

Abstract read
In one paragraph

Article in Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
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  17. Article
  18. Article
  19. Molecular Ecological Basis of Grasshopper (Frontiers in physiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Naomi ZivCenter for Genomics and Systems Biology, New York University, New York.ORCID 0000-0003-1299-5335
Bentley M ShusterCenter for Genomics and Systems Biology, New York University, New York.
Mark L SiegalCenter for Genomics and Systems Biology, New York University, New York dgresham@nyu.edu mark.siegal@nyu.edu.ORCID 0000-0001-6930-2988
David GreshamCenter for Genomics and Systems Biology, New York University, New York dgresham@nyu.edu mark.siegal@nyu.edu.ORCID 0000-0002-4028-0364

Funding

Regulation of Quiescence in Eukaryotic CellsR01GM107466 · NIGMS · NEW YORK UNIVERSITY · PI GRESHAM, DAVID · 2013 to 2022
$3.0M
Sequencing yeast lines to measure rates of neutral and deleterious mutationsR01GM097415 · NIGMS · NEW YORK UNIVERSITY · PI PETROV, DMITRI, SIEGAL, MARK L · 2011 to 2014
$2.3M
Genetic and Nongenetic Variation in Complex TraitsR35GM118170 · NIGMS · NEW YORK UNIVERSITY · PI SIEGAL, MARK L · 2016 to 2021
$1.7M
Sources and consequences of phenotypic variation in complex regulatory networksR01GM086673 · NIGMS · NEW YORK UNIVERSITY · PI SIEGAL, MARK L · 2010 to 2013
$929k
NIGMS NIH HHS R01 GM086673NIGMS NIH HHS R01 GM097415NIGMS NIH HHS R01 GM107466NIGMS NIH HHS R35 GM118170
6 · The paper itself

Abstract

In all organisms, the majority of traits vary continuously between individuals. Explaining the genetic basis of quantitative trait variation requires comprehensively accounting for genetic and nongenetic factors as well as their interactions. The growth of microbial cells can be characterized by a lag duration, an exponential growth phase, and a stationary phase. Parameters that characterize these growth phases can vary among genotypes (phenotypic variation), environmental conditions (phenotypic plasticity), and among isogenic cells in a given environment (phenotypic variability). We used a high-throughput microscopy assay to map genetic loci determining variation in lag duration and exponential growth rate in growth rate-limiting and nonlimiting glucose concentrations, using segregants from a cross of two natural isolates of the budding yeast,

Indexed as

Genetic VariationPhenotypeQuantitative Trait LociAllelesCell ProliferationEnvironmentGenotypeMonosaccharide Transport ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsHXT7 protein, S cerevisiaeMonosaccharide Transport ProteinsSaccharomyces cerevisiae Proteinsbulk segregant mappingHXT7microcolonyquantitative trait locusyeast

Identifiers

PMID28495957
PMCPMC5500157

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.