Evidence map›Paper›PMID 28493947›Full record

ArticlePloS one2017

Post-translational modifications of FDA-approved plasma biomarkers in glioblastoma samples.

Natalia A Petushkova, Victor G Zgoda, Mikhail A Pyatnitskiy, Olesya V Larina, Nadezhda B Teryaeva, Alexander A Potapov, Andrey V Lisitsa

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Evaluation of Haptoglobin and Its Proteoforms as Glioblastoma Markers.International journal of molecular sciences · 2021
    Article
  5. Article
  6. Review
  7. Proteomic Interrogation in Cancer Biomarker.Advances in experimental medicine and biology · 2021
    Article
  8. Haptoglobin as a Biomarker.Biochemistry (Moscow) Supplement. Series B, Biomedical chemistry · 2021
    Article
  9. Article
  10. Review
  11. Decoding the PTM-switchboard of Notch.Biochimica et biophysica acta. Molecular cell research · 2019
    Review
  12. Review
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Natalia A PetushkovaV.-N. Orekhovich Research Institute of Biomedical Chemistry, Moscow, Russia.ORCID http://orcid.org/0000-0002-4101-4607
Victor G ZgodaV.-N. Orekhovich Research Institute of Biomedical Chemistry, Moscow, Russia.
Mikhail A PyatnitskiyV.-N. Orekhovich Research Institute of Biomedical Chemistry, Moscow, Russia.
Olesya V LarinaV.-N. Orekhovich Research Institute of Biomedical Chemistry, Moscow, Russia.
Nadezhda B TeryaevaN.-N. Burdenko Research Institute of Neurosurgery, Moscow, Russia.
Alexander A PotapovN.-N. Burdenko Research Institute of Neurosurgery, Moscow, Russia.
Andrey V LisitsaV.-N. Orekhovich Research Institute of Biomedical Chemistry, Moscow, Russia.
Institute of Biomedical Chemistry · RUBurdenko Neurosurgery Institute · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Liquid chromatography-tandem mass spectrometry was used to analyze plasma proteins of volunteers (control) and patients with glioblastoma multiform (GBM). A database search was pre-set with a variable post-translational modification (PTM): phosphorylation, acetylation or ubiquitination. There were no significant differences between the control and the GBM groups regarding the number of protein identifications, sequence coverage or number of PTMs. However, in GBM plasma, we unambiguously observed a decreased fraction in post-translationally modified peptides identified with high quality. The disease-specific PTM patterns were extracted and mapped to the set of FDA-approved plasma protein markers. Decreases of 46% and 24% in the number of acetylated and ubiquitinated peptides, respectively, were observed in the GBM samples. Significance of capturing disease-associated patterns of protein modifications was envisaged.

Indexed as

Acetylationalpha-2-HS-GlycoproteinBiomarkersChromatography, LiquidGlioblastomaHumansPhosphorylationProtein Processing, Post-TranslationalTandem Mass SpectrometryUbiquitinationalpha-2-HS-GlycoproteinBiomarkers

Identifiers

PMID28493947
PMCPMC5426747
OpenAlexW2613625419

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.