Evidence map›Paper›PMID 28490758›Full record

ArticleScientific reports2017

Identifying conformational changes with site-directed spin labeling reveals that the GTPase domain of HydF is a molecular switch.

Laura Galazzo, Lorenzo Maso, Edith De Rosa, Marco Bortolus, Davide Doni, Laura Acquasaliente, Vincenzo De Filippis, Paola Costantini, Donatella Carbonera

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. In vitro maturation of fully active [FeFe]-hydrogenase in a defined system including the iron carrier NfuA.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. HydG, the "dangler" iron, and catalytic production of free CO and CNDalton transactions (Cambridge, England : 2003) · 2021
    Article
  6. Review
  7. Article
  8. H-cluster assembly intermediates built on HydF by the radical SAM enzymes HydE and HydG.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2019
    Article
  9. Monitoring H-cluster assembly using a semi-synthetic HydF protein.Dalton transactions (Cambridge, England : 2003) · 2019
    Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Laura GalazzoDepartment of Chemical Sciences, University of Padova, Via F. Marzolo 1, 35131, Padova, Italy.
Lorenzo MasoDepartment of Biology, University of Padova, Viale G. Colombo 3, 35131, Padova, Italy.
Edith De RosaDepartment of Biology, University of Padova, Viale G. Colombo 3, 35131, Padova, Italy.
Marco BortolusDepartment of Chemical Sciences, University of Padova, Via F. Marzolo 1, 35131, Padova, Italy.
Davide DoniDepartment of Chemical Sciences, University of Padova, Via F. Marzolo 1, 35131, Padova, Italy.
Laura AcquasalienteDepartment of Pharmaceutical and Pharmacological Sciences, University of Padova, Via F. Marzolo 5, 35131, Padova, Italy.
Vincenzo De FilippisDepartment of Pharmaceutical and Pharmacological Sciences, University of Padova, Via F. Marzolo 5, 35131, Padova, Italy.
Paola CostantiniDepartment of Biology, University of Padova, Viale G. Colombo 3, 35131, Padova, Italy. paola.costantini@unipd.it.
Donatella CarboneraDepartment of Chemical Sciences, University of Padova, Via F. Marzolo 1, 35131, Padova, Italy. donatella.carbonera@unipd.it.
University of Padua · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

[FeFe]-hydrogenases catalyse the reduction of protons to hydrogen at a complex 2Fe[4Fe4S] center called H-cluster. The assembly of this active site is a multistep process involving three proteins, HydE, HydF and HydG. According to the current models, HydF has the key double role of scaffold, upon which the final H-cluster precursor is assembled, and carrier to transfer it to the target hydrogenase. The X-ray structure of HydF indicates that the protein is a homodimer with both monomers carrying two functional domains: a C-terminal FeS cluster-binding domain, where the precursor is assembled, and a N-terminal GTPase domain, whose exact contribution to cluster biogenesis and hydrogenase activation is still elusive. We previously obtained several hints suggesting that the binding of GTP to HydF could be involved in the interactions of this scaffold protein with the other maturases and with the hydrogenase itself. In this work, by means of site directed spin labeling coupled to EPR/PELDOR spectroscopy, we explored the conformational changes induced in a recombinant HydF protein by GTP binding, and provide the first clue that the HydF GTPase domain could be involved in the H-cluster assembly working as a molecular switch similarly to other known small GTPases.

Indexed as

Spin LabelsAmino Acid SequenceBacterial ProteinsComputer SimulationElectron Spin Resonance SpectroscopyGTP PhosphohydrolasesMutant ProteinsNucleotidesProtein DomainsProtein Structure, SecondaryRecombinant ProteinsThermotoga neapolitanaBacterial ProteinsGTP PhosphohydrolasesMutant ProteinsNucleotidesRecombinant ProteinsSpin Labels

Identifiers

PMID28490758
PMCPMC5431965
OpenAlexW2610889696

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.