Evidence map›Paper›PMID 28490494›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Structural basis for spumavirus GAG tethering to chromatin.

Paul Lesbats, Erik Serrao, Daniel P Maskell, Valerie E Pye, Nicola O'Reilly, Dirk Lindemann, Alan N Engelman, Peter Cherepanov

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
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  14. Protein arginine methylation in viral infection and antiviral immunity.International journal of biological sciences · 2023
    Review
  15. Review
  16. Epstein-Barr virus protein BKRF4 restricts nucleosome assembly to suppress host antiviral responses.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  17. Article
  18. Review
  19. Structure and function of retroviral integrase.Nature reviews. Microbiology · 2022
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Paul LesbatsChromatin Structure and Mobile DNA, The Francis Crick Institute, London NW1 1AT, United Kingdom.
Erik SerraoDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02215.
Daniel P MaskellChromatin Structure and Mobile DNA, The Francis Crick Institute, London NW1 1AT, United Kingdom.
Valerie E PyeChromatin Structure and Mobile DNA, The Francis Crick Institute, London NW1 1AT, United Kingdom.
Nicola O'ReillyPeptide Chemistry, The Francis Crick Institute, London NW1 1AT, United Kingdom.
Dirk LindemannInstitute of Virology, Technische Universität Dresden, Dresden, 01307, Germany.
Alan N EngelmanDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02215; peter.cherepanov@crick.ac.uk alan_engelman@dfci.harvard.edu.
Peter CherepanovChromatin Structure and Mobile DNA, The Francis Crick Institute, London NW1 1AT, United Kingdom; peter.cherepanov@crick.ac.uk alan_engelman@dfci.harvard.edu.ORCID 0000-0002-0634-538X
The Francis Crick Institute · GBHarvard University · USTechnische Universität Dresden · DE

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI RAJESH T GANDHI · 2004 to 2026
$94.4M
X-Ray Core P50GM082251 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ENGELMAN, ALAN N. · 2007 to 2018
$48.1M
Biochemical Mechanism of HIV DNA IntegrationR37AI039394 · NIAID · DANA-FARBER CANCER INST · PI Alan N. Engelman · 2010 to 2026
$10.2M
BIOCHEMICAL MECHANISM OF HIV DNA INTEGRATIONR01AI039394 · NIAID · DANA-FARBER CANCER INSTITUTE · PI ENGELMAN, ALAN N. · 1996 to 2009
$3.8M
Cancer Research UK FC001061NIAID NIH HHS P30 AI060354NIAID NIH HHS R01 AI039394NIAID NIH HHS R37 AI039394NIGMS NIH HHS P50 GM082251Wellcome Trust
6 · The paper itself

Abstract

The interactions between a retrovirus and host cell chromatin that underlie integration and provirus expression are poorly understood. The prototype foamy virus (PFV) structural protein GAG associates with chromosomes via a chromatin-binding sequence (CBS) located within its C-terminal region. Here, we show that the PFV CBS is essential and sufficient for a direct interaction with nucleosomes and present a crystal structure of the CBS bound to a mononucleosome. The CBS interacts with the histone octamer, engaging the H2A-H2B acidic patch in a manner similar to other acidic patch-binding proteins such as herpesvirus latency-associated nuclear antigen (LANA). Substitutions of the invariant arginine anchor residue in GAG result in global redistribution of PFV and macaque simian foamy virus (SFV

Indexed as

Virus IntegrationHistonesNucleosomesSpumavirusHistonesNucleosomeschromatin-bindingintegrationnucleosomeretrovirus

Identifiers

PMID28490494
PMCPMC5448199
OpenAlexW2613642509

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.