Evidence map›Paper›PMID 28487492›Full record

ArticleOncotarget2017

Sequencing of cancer cell subpopulations identifies micrometastases in a bladder cancer patient.

Kris Prado, Kelvin X Zhang, Matteo Pellegrini, Arnold I Chin

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Micrometastasis in lymph nodes of colorectal cancer.Annals of gastroenterological surgery · 2022
    Review
  2. Review
  3. Article
  4. Review
  5. Potential application of cell reprogramming techniques for cancer research.Cellular and molecular life sciences : CMLS · 2019
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Kris PradoDepartment of Urology, UCLA, Los Angeles, CA 90095, USA.
Kelvin X ZhangMerck Sharp & Dohme Co., Computational Genomics and Informatics, Boston, MA 02210, USA.
Matteo PellegriniDepartment of Molecular, Cell, and Developmental Biology, UCLA, Los Angeles, CA 90095, USA.
Arnold I ChinDepartment of Urology, UCLA, Los Angeles, CA 90095, USA.
Broad Center · USMerck & Co., Inc., Rahway, NJ, USA (United States) · USUCLA Jonsson Comprehensive Cancer Center

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposePathologic staging of bladder cancer patients remains a challenge. Standard-of-care histology exhibits limited sensitivity in detection of micrometastases, which can increase risk of cancer progression and delay potential adjuvant therapies. Here, we sought to develop a proof of concept novel molecular approach to improve detection of cancer micrometastasis. EXPERIMENTAL

designWe combined fluorescence activated cell sorting and next-generation sequencing and performed whole-exome sequencing of total cancer cells and cancer cell subpopulations in multiple tumor specimens and regional lymph nodes in a single patient with muscle-invasive urothelial carcinoma of the bladder following radical cystectomy.

resultsMean allele frequency analysis demonstrated a significant correlation between primary tumor cancer cells and cancer cells isolated from the lymph nodes, confirming lymph node disease despite negative pathologic staging. RNA-sequencing revealed intratumoral heterogeneity as well as enrichment for immune system and lipid metabolism gene sets in the micrometastatic cancer cell subpopulations.

conclusionsOur analysis illustrates how next-generation sequencing of cancer cell subpopulations may be utilized to enrich for cancer cell markers and enhance detection of bladder cancer micrometastases to improve pathologic staging and provide insight into cancer cell biology.

Indexed as

AllelesBiomarkersExome SequencingFemaleGene FrequencyGenetic VariationHumansLymphatic MetastasisLymph NodesMaleMiddle AgedNeoplasm MicrometastasisUrinary Bladder NeoplasmsBiomarkersbladder cancercancer initiating cellsmicrometastasesnext-generation sequencingpathologic staging

Identifiers

PMID28487492
PMCPMC5542213
OpenAlexW2606166787

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.