Evidence map›Paper›PMID 28487430›Full record

ArticlemBio2017

RNA-Dependent Cysteine Biosynthesis in Bacteria and Archaea.

Takahito Mukai, Ana Crnković, Takuya Umehara, Natalia N Ivanova, Nikos C Kyrpides, Dieter Söll

Open access · goldAbstract read
In one paragraph

Article in mBio, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Update of the Pyrrolysyl-tRNA Synthetase/tRNAJournal of bacteriology · 2023
    Review
  6. Ancestral archaea expanded the genetic code with pyrrolysine.The Journal of biological chemistry · 2022
    Article
  7. Unconventional genetic code systems in archaea.Frontiers in microbiology · 2022
    Review
  8. Review
  9. Review
  10. Evolution of the genetic code.Transcription · 2021
    Review
  11. Article
  12. Expanded Diversity and Phylogeny ofFrontiers in microbiology · 2021
    Article
  13. Aminoacyl-tRNA synthetases.RNA (New York, N.Y.) · 2020
    Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Takahito MukaiDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA.
Ana CrnkovićDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA.
Takuya UmeharaDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA.
Natalia N IvanovaDepartment of Energy Joint Genome Institute (DOE JGI), Walnut Creek, California, USA.
Nikos C KyrpidesDepartment of Energy Joint Genome Institute (DOE JGI), Walnut Creek, California, USA.
Dieter SöllDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA dieter.soll@yale.edu.
Yale University · USJoint Genome Institute · USTokyo University of Science · JP

Funding

TRANSFER RNAR01GM022854 · NIGMS · YALE UNIVERSITY · PI SOLL, DIETER · 1985 to 2016
$21.3M
Studies of Transfer RNAR35GM122560 · NIGMS · YALE UNIVERSITY · PI SOLL, DIETER · 2017 to 2022
$5.6M
NIGMS NIH HHS R01 GM022854NIGMS NIH HHS R35 GM122560
6 · The paper itself

Abstract

The diversity of the genetic code systems used by microbes on earth is yet to be elucidated. It is known that certain methanogenic archaea employ an alternative system for cysteine (Cys) biosynthesis and encoding; tRNA

Indexed as

Amino Acyl-tRNA SynthetasesArchaeaArchaeal ProteinsBacteriaComputational BiologyCrystallography, X-RayCysteineGenetic CodeGenome, ArchaealGenome, BacterialPhosphoserineProtein BindingProtein BiosynthesisRNA, ArchaealRNA, BacterialRNA, Transfer, Amino AcylAmino Acyl-tRNA SynthetasesArchaeal ProteinsCysteinecysteinyl-tRNA synthetasePhosphoserineRNA, ArchaealRNA, BacterialRNA, Transfer, Amino AcylRNA, Transfer, CysSulfurbiochemistrybioinformaticscysteine biosynthesisgenetic codetranslation

Identifiers

PMID28487430
PMCPMC5424206
OpenAlexW2613219044

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.