Evidence map›Paper›PMID 28487381›Full record

ArticleRNA (New York, N.Y.)2017

Improved microRNA suppression by WPRE-linked tough decoy microRNA sponges.

Anne Kruse Hollensen, Rune Thomsen, Rasmus O Bak, Charlotte Christie Petersen, Eva R Ermegaard, Lars Aagaard, Christian Kroun Damgaard, Jacob Giehm Mikkelsen

Abstract read
In one paragraph

Article in RNA (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  9. eLife · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Anne Kruse HollensenDepartment of Biomedicine, HEALTH, Aarhus University, DK-8000 Aarhus C, Denmark.
Rune ThomsenDepartment of Molecular Biology and Genetics, Science and Technology, Aarhus University, DK-8000 Aarhus C, Denmark.
Rasmus O BakDepartment of Biomedicine, HEALTH, Aarhus University, DK-8000 Aarhus C, Denmark.
Charlotte Christie PetersenDepartment of Biomedicine, HEALTH, Aarhus University, DK-8000 Aarhus C, Denmark.
Eva R ErmegaardDepartment of Biomedicine, HEALTH, Aarhus University, DK-8000 Aarhus C, Denmark.
Lars AagaardDepartment of Biomedicine, HEALTH, Aarhus University, DK-8000 Aarhus C, Denmark.
Christian Kroun DamgaardDepartment of Molecular Biology and Genetics, Science and Technology, Aarhus University, DK-8000 Aarhus C, Denmark.
Jacob Giehm MikkelsenDepartment of Biomedicine, HEALTH, Aarhus University, DK-8000 Aarhus C, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our genes are post-transcriptionally regulated by microRNAs (miRNAs) inducing translational suppression and degradation of targeted mRNAs. Strategies to inhibit miRNAs in a spatiotemporal manner in a desired cell type or tissue, or at a desired developmental stage, can be crucial for understanding miRNA function and for pushing forward miRNA suppression as a feasible rationale for genetic treatment of disease. For such purposes, RNA polymerase II (RNA Pol II)-transcribed tough decoy (TuD) miRNA inhibitors are particularly attractive. Here, we demonstrate augmented miRNA suppression capacity of TuD RNA hairpins linked to the Woodchuck hepatitis virus post-transcriptional regulatory element (WPRE). This effect is position-dependent and evident only when the WPRE is positioned upstream of the TuD. In accordance, inclusion of the WPRE does not change nuclear export, translation, total levels of TuD-containing RNA transcripts, or cytoplasmic P-body localization, suggesting that previously reported WPRE functions are negligible for improved TuD function. Notably, deletion analysis of TuD-fused WPRE unveils truncated WPRE variants resulting in optimized miRNA suppression. Together, our findings add to the guidelines for production of WPRE-supported anti-miRNA TuDs.

Indexed as

Gene Expression RegulationRegulatory Elements, TranscriptionalBinding SitesGenetic VectorsHEK293 CellsHumansMicroRNAsPromoter Regions, GeneticRNA, MessengerRNA Polymerase IIMicroRNAsRNA, MessengerRNA Polymerase IIdecoymiRNA spongemiRNA suppressionTuDWPRE

Identifiers

PMID28487381
PMCPMC5513069

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.