Evidence map›Paper›PMID 28486490›Full record

ArticlePloS one2017

Novel avian paramyxovirus (APMV-15) isolated from a migratory bird in South America.

Luciano Matsumiya Thomazelli, Jansen de Araújo, Thomas Fabrizio, David Walker, Dilmara Reischak, Tatiana Ometto, Carla Meneguin Barbosa, Maria Virginia Petry, Richard J Webby, Edison Luiz Durigon

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Luciano Matsumiya ThomazelliLaboratorio de Virologia Clinica e Molecular do Instituto de Ciencias Biomedicas, Universidade de Sao Paulo, Sao Paulo, Brazil.ORCID http://orcid.org/0000-0002-9157-6122
Jansen de AraújoLaboratorio de Virologia Clinica e Molecular do Instituto de Ciencias Biomedicas, Universidade de Sao Paulo, Sao Paulo, Brazil.
Thomas FabrizioDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, United States of America.
David WalkerDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, United States of America.
Dilmara ReischakLaboratório Nacional Agropecuário, Campinas, Sao Paulo, Brazil.
Tatiana OmettoLaboratorio de Virologia Clinica e Molecular do Instituto de Ciencias Biomedicas, Universidade de Sao Paulo, Sao Paulo, Brazil.
Carla Meneguin BarbosaLaboratorio de Virologia Clinica e Molecular do Instituto de Ciencias Biomedicas, Universidade de Sao Paulo, Sao Paulo, Brazil.
Maria Virginia PetryUniversidade do Vale do Rio dos Sinos, Sao Leopoldo, Rio Grande do Sul, Brazil.
Richard J WebbyDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, United States of America.
Edison Luiz DurigonLaboratorio de Virologia Clinica e Molecular do Instituto de Ciencias Biomedicas, Universidade de Sao Paulo, Sao Paulo, Brazil.

Funding

NIAID NIH HHS HHSN266200700005C
6 · The paper itself

Abstract

A novel avian paramyxovirus (APMV) isolated from a migratory bird cloacal swab obtained during active surveillance in April 2012 in the Lagoa do Peixe National Park, Rio Grande do Sul state, South of Brazil was biologically and genetically characterized. The nucleotide sequence of the full viral genome was completed using a next-generation sequencing approach. The genome was 14,952 nucleotides (nt) long, with six genes (3'-NP-P-M-F-HN-L-5') encoding 7 different proteins, typical of APMV. The fusion (F) protein gene of isolate RS-1177 contained 1,707 nucleotides in a single open reading frame encoding a protein of 569 amino acids. The F protein cleavage site contained two basic amino acids (VPKER↓L), typical of avirulent strains. Phylogenetic analysis of the whole genome indicated that the virus is related to APMV-10, -2 and -8, with 60.1% nucleotide sequence identity to the closest APMV-10 virus, 58.7% and 58.5% identity to the closest APMV-8 and APMV-2 genome, respectively, and less than 52% identity to representatives of the other APMVs groups. Such distances are comparable to the distances observed among other previously identified APMVs serotypes. These results suggest that unclassified/calidris_fuscicollis/Brazil/RS-1177/2012 is the prototype strain of a new APMV serotype, APMV-15.

Indexed as

Animal MigrationAnimalsAvulavirusBirdsGenes, ViralPhylogenySouth America

Identifiers

PMID28486490
PMCPMC5423646

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.