Evidence map›Paper›PMID 28486430›Full record

ArticleInternational journal of molecular sciences2017

Characterization of Copy Number Variation's Potential Role in Marek's Disease.

Lingyang Xu, Yanghua He, Yi Ding, Guirong Sun, Jose Adrian Carrillo, Yaokun Li, Mona M Ghaly, Li Ma, Huanmin Zhang, George E Liu and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Marek's Disease Virus Infection Induced Mitochondria Changes in Chickens.International journal of molecular sciences · 2019
    Article
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  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Lingyang XuDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA. xulingyang@163.com.
Yanghua HeDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA. yhe12345@umd.edu.
Yi DingDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA. dingyi.umd@gmail.com.
Guirong SunDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA. grsun2000@126.com.
Jose Adrian CarrilloDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA. carrillo@umd.edu.
Yaokun LiDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA. liyaokun1986@163.com.
Mona M GhalyDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA. monaghaly19@yahoo.com.
Li MaDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA. lima@umd.edu.
Huanmin ZhangUSDA, Agriculture Research Service, Avian Disease and Oncology Laboratory, East Lansing, MI 48823, USA. Huanmin.Zhang@ars.usda.gov.
George E LiuAnimal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. George.Liu@ars.usda.gov.
Jiuzhou SongDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA. songj88@umd.edu.
University of Maryland, College Park · USAgricultural Research Service · USCairo University · EGHenan Agricultural University · CNMichigan Department of Agriculture and Rural Development · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Marek's Disease (MD) is a highly contagious pathogenic and oncogenic disease primarily affecting chickens. Chicken Lines 63 and 72, as well as their recombinant congenic strains (RCS) with varied susceptibility to MD, are ideal models to study the complex mechanisms of genetic resistance to MD. In this study, we investigated copy number variation (CNV) in these inbred chicken lines using the Affymetrix Axiom HD 600 K SNP genotyping array. We detected 393 CNV segments across all ten chicken lines, of which 12 CNVs were specifically identified in Line 72. We then assessed genetic structure based on CNV and observed markedly different patterns. Finally, we validated two deletion events in Line 72 and correlated them with genes expression using qPCR and RNA-seq, respectively. Our combined results indicated that these two CNV deletions were likely to contribute to MD susceptibility.

Indexed as

DNA Copy Number VariationsAnimalsChickensGene DeletionMarek Diseasechickencopy number variationinbred linesMarek’s diseaserecombinant congenic strains (RCS)RNA-sequencing

Identifiers

PMID28486430
PMCPMC5454933
OpenAlexW2613933921

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.