Evidence map›Paper›PMID 28485403›Full record

ArticleMolecular psychiatry2018

GAD1 alternative transcripts and DNA methylation in human prefrontal cortex and hippocampus in brain development, schizophrenia.

R Tao, K N Davis, C Li, J H Shin, Y Gao, A E Jaffe, M C Gondré-Lewis, D R Weinberger, J E Kleinman, T M Hyde

Open access · greenAbstract read
In one paragraph

Article in Molecular psychiatry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
9.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 70 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

R TaoThe Lieber Institute for Brain Development, Johns Hopkins University Medical Campus, Baltimore, MD, USA.
K N DavisThe Lieber Institute for Brain Development, Johns Hopkins University Medical Campus, Baltimore, MD, USA.
C LiThe Lieber Institute for Brain Development, Johns Hopkins University Medical Campus, Baltimore, MD, USA.
J H ShinThe Lieber Institute for Brain Development, Johns Hopkins University Medical Campus, Baltimore, MD, USA.
Y GaoThe Lieber Institute for Brain Development, Johns Hopkins University Medical Campus, Baltimore, MD, USA.
A E JaffeThe Lieber Institute for Brain Development, Johns Hopkins University Medical Campus, Baltimore, MD, USA.
M C Gondré-LewisDevelopmental Neuropsychopharmacology Laboratory, Department of Anatomy, Howard University College of Medicine, Washington, DC, USA.
D R WeinbergerThe Lieber Institute for Brain Development, Johns Hopkins University Medical Campus, Baltimore, MD, USA.
J E KleinmanThe Lieber Institute for Brain Development, Johns Hopkins University Medical Campus, Baltimore, MD, USA.
T M HydeThe Lieber Institute for Brain Development, Johns Hopkins University Medical Campus, Baltimore, MD, USA.
Johns Hopkins University · USLieber Institute for Brain Development · USHoward University · USJohns Hopkins Medicine · US

Funding

Sleep Disorders in Adults with Sickle Cell Disease: Frequency, Associations with Cardiovascular and Pain Indicators, and Responses to TreatmentU54MD007597 · NIMHD · HOWARD UNIVERSITY · PI Tatiana V.D. Sanses · 2019 to 2026
$37.7M
Research_ProjectU54HD090257 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI VITTORIO GALLO, VITTORIO GALLO VITTORIO GALLO · 2016 to 2020
$5.9M
Excessive Alcohol Drinking Associated with GABA Alpha 2-Regulated TLR4 ExpressionR01AA021262 · NIAAA · HOWARD UNIVERSITY · PI AURELIAN, LAURE, GONDRE-LEWIS, MARJORIE C · 2013 to 2017
$2.3M
NIAAA NIH HHS R01 AA021262NICHD NIH HHS U54 HD090257NIMHD NIH HHS U54 MD007597
6 · The paper itself

Abstract

Genetic variations and adverse environmental events in utero or shortly after birth can lead to abnormal brain development and increased risk of schizophrenia. γ-Aminobutyric acid (GABA), the major inhibitory neurotransmitter in the mammalian brain, plays a vital role in normal brain development. GABA synthesis is controlled by enzymes derived from two glutamic acid decarboxylase (GAD) genes, GAD1 and GAD2, both of which produce transcript isoforms. While the full-length GAD1 transcript (GAD67) has been implicated in the neuropathology of schizophrenia, the transcript structure of GAD1 in the human brain has not been fully characterized. In this study, with the use of RNA sequencing and PCR technologies, we report the discovery of 10 novel transcripts of GAD1 in the human brain. Expression levels of four novel GAD1 transcripts (8A, 8B, I80 and I86) showed a lifespan trajectory expression pattern that is anticorrelated with the expression of the full-length GAD1 transcript. In addition, methylation levels of two CpG loci within the putative GAD1 promoter were significantly associated with the schizophrenia-risk SNP rs3749034 and with the expression of GAD25 in dorsolateral prefrontal cortex (DLPFC). Moreover, schizophrenia patients who had completed suicide and/or were positive for nicotine exposure had significantly higher full-length GAD1 expression in the DLPFC. Alternative splicing of GAD1 and epigenetic state appear to play roles in the developmental profile of GAD1 expression and may contribute to GABA dysfunction in the PFC and hippocampus of patients with schizophrenia.

Indexed as

AdolescentAdultAlternative SplicingAutopsyBrainChildChild, PreschoolDNA MethylationFemaleGene ExpressionGenetic VariationGlutamate DecarboxylaseHippocampusHumansInfant, NewbornMaleGlutamate Decarboxylaseglutamate decarboxylase 1RNA IsoformsRNA, Messenger

Identifiers

PMID28485403
PMCPMC7564279
OpenAlexW2612200206

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.