Evidence map›Paper›PMID 28484015›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Adaptation of cone pigments found in green rods for scotopic vision through a single amino acid mutation.

Keiichi Kojima, Yuki Matsutani, Takahiro Yamashita, Masataka Yanagawa, Yasushi Imamoto, Yumiko Yamano, Akimori Wada, Osamu Hisatomi, Kanto Nishikawa, Keisuke Sakurai and 1 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 43 citations in OpenAlex.

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  8. Phototransduction in Anuran Green Rods: Origins of Extra-Sensitivity.International journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Keiichi KojimaDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
Yuki MatsutaniDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
Takahiro YamashitaDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
Masataka YanagawaCellular Informatics Laboratory, RIKEN, Wako 351-0198, Japan.
Yasushi ImamotoDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
Yumiko YamanoDepartment of Organic Chemistry for Life Science, Kobe Pharmaceutical University, Kobe 658-8558, Japan.
Akimori WadaDepartment of Organic Chemistry for Life Science, Kobe Pharmaceutical University, Kobe 658-8558, Japan.
Osamu HisatomiDepartment of Earth and Space Science, Graduate School of Science, Osaka University, Osaka 560-0043, Japan.
Kanto NishikawaGraduate School of Human and Environmental Studies, Kyoto University, Kyoto 606-8501, Japan.
Keisuke SakuraiFaculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8577, Japan.
Yoshinori ShichidaDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan; shichida@rh.biophys.kyoto-u.ac.jp.
Kyoto University · JPKobe Pharmaceutical University · JPOsaka Health Science University · JPRIKEN Advanced Science Institute · JPUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most vertebrate retinas contain a single type of rod for scotopic vision and multiple types of cones for photopic and color vision. The retinas of certain amphibian species uniquely contain two types of rods: red rods, which express rhodopsin, and green rods, which express a blue-sensitive cone pigment (M1/SWS2 group). Spontaneous activation of rhodopsin induced by thermal isomerization of the retinal chromophore has been suggested to contribute to the rod's background noise, which limits the visual threshold for scotopic vision. Therefore, rhodopsin must exhibit low thermal isomerization rate compared with cone visual pigments to adapt to scotopic condition. In this study, we determined whether amphibian blue-sensitive cone pigments in green rods exhibit low thermal isomerization rates to act as rhodopsin-like pigments for scotopic vision. Anura blue-sensitive cone pigments exhibit low thermal isomerization rates similar to rhodopsin, whereas Urodela pigments exhibit high rates like other vertebrate cone pigments present in cones. Furthermore, by mutational analysis, we identified a key amino acid residue, Thr47, that is responsible for the low thermal isomerization rates of Anura blue-sensitive cone pigments. These results strongly suggest that, through this mutation, anurans acquired special blue-sensitive cone pigments in their green rods, which could form the molecular basis for scotopic color vision with normal red rods containing green-sensitive rhodopsin.

Indexed as

Color VisionNight VisionAdaptation, BiologicalAmbystoma mexicanumAmino Acid SubstitutionAnimalsEvolution, MolecularOpsinsXenopusOpsinsamphibiancolor discriminationmolecular evolutionphotoreceptor cellvisual pigment

Identifiers

PMID28484015
PMCPMC5448186
OpenAlexW2612983338

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.