Evidence map›Paper›PMID 28482902›Full record

ArticleMicrobial cell factories2017

Substrates and oxygen dependent citric acid production by Yarrowia lipolytica: insights through transcriptome and fluxome analyses.

Wael Sabra, Rajesh Reddy Bommareddy, Garima Maheshwari, Seraphim Papanikolaou, An-Ping Zeng

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
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  4. ReprogrammingScience advances · 2024
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  6. Application of NewInternational journal of molecular sciences · 2024
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  7. Article
  8. Large-Scale Production of Isocitric Acid UsingBiotech (Basel (Switzerland)) · 2023
    Article
  9. Article
  10. Article
  11. Development of Hypertolerant Strain ofACS sustainable chemistry & engineering · 2022
    Article
  12. Review
  13. Article
  14. Molecules (Basel, Switzerland) · 2022
    Review
  15. Review
  16. Journal of fungi (Basel, Switzerland) · 2021
    Review
  17. Article
  18. Article
  19. Article
  20. Analysis ofMetabolic engineering communications · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Wael SabraInstitute of Bioprocess and Biosystems Engineering, Hamburg University of Technology, Denickestrasse 15, 21071, Hamburg, Germany.ORCID http://orcid.org/0000-0002-1403-0855
Rajesh Reddy BommareddyInstitute of Bioprocess and Biosystems Engineering, Hamburg University of Technology, Denickestrasse 15, 21071, Hamburg, Germany.
Garima MaheshwariInstitute of Bioprocess and Biosystems Engineering, Hamburg University of Technology, Denickestrasse 15, 21071, Hamburg, Germany.
Seraphim PapanikolaouDepartment of Food Science and Human Nutrition, Agricultural University of Athens, 11855, Athens, Greece.
An-Ping ZengInstitute of Bioprocess and Biosystems Engineering, Hamburg University of Technology, Denickestrasse 15, 21071, Hamburg, Germany. aze@tuhh.de.
Universität Hamburg · DEAgricultural University of Athens · GRUniversity of Nottingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundUnlike the well-studied backer yeast where catabolite repression represents a burden for mixed substrate fermentation, Yarrowia lipolytica, an oleaginous yeast, is recognized for its potential to produce single cell oils and citric acid from different feedstocks. These versatilities of Y. lipolytica with regards to substrate utilization make it an attractive host for biorefinery application. However, to develop a commercial process for the production of citric acid by Y. lipolytica, it is necessary to better understand the primary metabolism and its regulation, especially for growth on mixed substrate.

resultsControlling the dissolved oxygen concentration (pO

conclusionUpregulation of most of the genes of the pentose phosphate pathway was found in cultures with highest citrate production with glucose in mono- or in dual substrate fermentation with pO

Indexed as

CitratesCitric AcidCulture MediaFermentationGene Expression ProfilingGlucoseGlycerolGlyoxylatesMetabolic Flux AnalysisOxygenPentose Phosphate PathwayYarrowiaCitratesCitric AcidCulture MediaGlucoseGlycerolGlyoxylatesOxygenCitric acidDual substrateGlyoxylate cycleOleaginous yeastPentose phosphate pathway

Identifiers

PMID28482902
PMCPMC5421321
OpenAlexW2612533264

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.