Evidence map›Paper›PMID 28481916›Full record

ArticlePLoS genetics2017

TCF21 and the environmental sensor aryl-hydrocarbon receptor cooperate to activate a pro-inflammatory gene expression program in coronary artery smooth muscle cells.

Juyong Brian Kim, Milos Pjanic, Trieu Nguyen, Clint L Miller, Dharini Iyer, Boxiang Liu, Ting Wang, Olga Sazonova, Ivan Carcamo-Orive, Ljubica Perisic Matic and 3 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 76 citations in OpenAlex.

  1. Pooled it
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  13. International journal of medical sciences · 2024
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  16. Bilirubin and Redox Stress in Age-Related Brain Diseases.Antioxidants (Basel, Switzerland) · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Juyong Brian KimDivision of Cardiovascular Medicine, Stanford University, Stanford, California, United States of America.ORCID http://orcid.org/0000-0002-9675-2607
Milos PjanicDivision of Cardiovascular Medicine, Stanford University, Stanford, California, United States of America.ORCID http://orcid.org/0000-0001-9746-8838
Trieu NguyenDivision of Cardiovascular Medicine, Stanford University, Stanford, California, United States of America.
Clint L MillerDivision of Cardiovascular Medicine, Stanford University, Stanford, California, United States of America.ORCID http://orcid.org/0000-0003-4276-3607
Dharini IyerDivision of Cardiovascular Medicine, Stanford University, Stanford, California, United States of America.
Boxiang LiuDepartment of Biology, Stanford University, Stanford, California, United States of America.
Ting WangDivision of Cardiovascular Medicine, Stanford University, Stanford, California, United States of America.
Olga SazonovaDivision of Cardiovascular Medicine, Stanford University, Stanford, California, United States of America.
Ivan Carcamo-OriveDivision of Cardiovascular Medicine, Stanford University, Stanford, California, United States of America.ORCID http://orcid.org/0000-0001-8823-4925
Ljubica Perisic MaticDepartment of Molecular Medicine and Surgery, Karolinska Institute, Solna, Sweden.
Lars MaegdefesselDepartment of Molecular Medicine and Surgery, Karolinska Institute, Solna, Sweden.
Ulf HedinDepartment of Molecular Medicine and Surgery, Karolinska Institute, Solna, Sweden.ORCID http://orcid.org/0000-0001-9212-3945
Thomas QuertermousDivision of Cardiovascular Medicine, Stanford University, Stanford, California, United States of America.
Cardiovascular Institute of the South · USStanford University · USKarolinska Institutet · SE

Funding

Causal variant association mechanisms in TCF21 binding coronary disease lociR01HL134817 · NHLBI · STANFORD UNIVERSITY · PI THOMAS QUERTERMOUS · 2017 to 2026
$6.2M
Mechanism of the Coronary Heart Disease Association at Chromosome 6q23.2R01HL109512 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2011 to 2019
$6.1M
Training in Myocardial Biology at Stanford (TIMBS)T32HL094274 · NHLBI · STANFORD UNIVERSITY · PI Euan A Ashley, Daniel Bernstein · 2010 to 2026
$5.0M
Identification of causal coronary heart disease variation in smooth muscle cellsR33HL120757 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2016 to 2018
$1.6M
Regulation of Inflammation and Atherosclerosis by TCF21K08HL133375 · NHLBI · STANFORD UNIVERSITY · PI KIM, JUYONG BRIAN · 2016 to 2020
$840k
EPISTATIC REGULATORY MECHANISMS OF CORONARY HEART DISEASE RISKR00HL125912 · NHLBI · UNIVERSITY OF VIRGINIA · PI MILLER, CLINT L · 2017 to 2019
$747k
Epistatic Regulatory Mechanisms of Coronary Heart Disease RiskK99HL125912 · NHLBI · STANFORD UNIVERSITY · PI MILLER, CLINT L · 2015 to 2016
$285k
NHLBI NIH HHS K08 HL133375NHLBI NIH HHS K99 HL125912NHLBI NIH HHS R00 HL125912NHLBI NIH HHS R01 HL109512NHLBI NIH HHS R01 HL134817NHLBI NIH HHS R33 HL120757NHLBI NIH HHS T32 HL094274
6 · The paper itself

Abstract

Both environmental factors and genetic loci have been associated with coronary artery disease (CAD), however gene-gene and gene-environment interactions that might identify molecular mechanisms of risk are not easily studied by human genetic approaches. We have previously identified the transcription factor TCF21 as the causal CAD gene at 6q23.2 and characterized its downstream transcriptional network that is enriched for CAD GWAS genes. Here we investigate the hypothesis that TCF21 interacts with a downstream target gene, the aryl hydrocarbon receptor (AHR), a ligand-activated transcription factor that mediates the cellular response to environmental contaminants, including dioxin and polycyclic aromatic hydrocarbons (e.g., tobacco smoke). Perturbation of TCF21 expression in human coronary artery smooth muscle cells (HCASMC) revealed that TCF21 promotes expression of AHR, its heterodimerization partner ARNT, and cooperates with these factors to upregulate a number of inflammatory downstream disease related genes including IL1A, MMP1, and CYP1A1. TCF21 was shown to bind in AHR, ARNT and downstream target gene loci, and co-localization was noted for AHR-ARNT and TCF21 binding sites genome-wide in regions of HCASMC open chromatin. These regions of co-localization were found to be enriched for GWAS signals associated with cardio-metabolic as well as chronic inflammatory disease phenotypes. Finally, we show that similar to TCF21, AHR gene expression is increased in atherosclerotic lesions in mice in vivo using laser capture microdissection, and AHR protein is localized in human carotid atherosclerotic lesions where it is associated with protein kinases with a critical role in innate immune response. These data suggest that TCF21 can cooperate with AHR to activate an inflammatory gene expression program that is exacerbated by environmental stimuli, and may contribute to the overall risk for CAD.

Indexed as

AnimalsAryl Hydrocarbon Receptor Nuclear TranslocatorAtherosclerosisBasic Helix-Loop-Helix ProteinsCells, CulturedCoronary VesselsCytochrome P-450 CYP1A1HEK293 CellsHumansInterleukin-1alphaMatrix Metalloproteinase 1MiceMice, Inbred C57BLMyocytes, Smooth MuscleProtein BindingReceptors, Aryl HydrocarbonAHR protein, humanARNT protein, humanAryl Hydrocarbon Receptor Nuclear TranslocatorBasic Helix-Loop-Helix ProteinsCYP1A1 protein, humanCytochrome P-450 CYP1A1IL1A protein, humanInterleukin-1alphaMatrix Metalloproteinase 1MMP1 protein, humanReceptors, Aryl HydrocarbonTCF21 protein, human

Identifiers

PMID28481916
PMCPMC5439967
OpenAlexW2612339615

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.