Evidence map›Paper›PMID 28481785›Full record

Observational studyJournal of acquired immune deficiency syndromes (1999)2017

Brief Report: CYP2B6 516G>T Minor Allele Protective of Late Virologic Failure in Efavirenz-Treated HIV-Infected Patients in Botswana.

Marijana Vujkovic, Scarlett L Bellamy, Athena F Zuppa, Marc Gastonguay, Ganesh S Moorthy, Bakgaki R Ratshaa, Xiaoyan Han, Andrew P Steenhoff, Mosepele Mosepele, Brian L Strom and 3 more

Open access · greenAbstract readObservational Study
In one paragraph

Observational study in Journal of acquired immune deficiency syndromes (1999), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Review
  4. Review
  5. Association ofPharmacogenomics and personalized medicine · 2021
    Article
  6. Article
  7. Heme oxygenase-1 promoter (GT)Neurology(R) neuroimmunology & neuroinflammation · 2020
    Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Marijana Vujkovic*Division of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA; †Department of Epidemiology and Biostatistics, Dornsife School of Public Health, Drexel University, Philadelphia, PA; ‡Department of Anesthesiology and Critical Care Medicine, Children's Hospital of Philadelphia, Philadelphia, PA; §Metrum Research Group, Tariffville, CT; ‖Botswana-UPenn Partnership, University of Botswana, Gaborone, Botswana; ¶Center for Clinical Epidemiology and Biostatistics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA; #Division of Infectious Diseases, Children's Hospital of Philadelphia, Philadelphia, PA; **Faculty of Medicine, University of Botswana, Gaborone, Botswana; ††Office of the Chancellor, Rutgers Biomedical and Health Sciences, Rutgers University, Newark, NJ; and ‡‡Department of Medicine (Infectious Diseases), University of Pennsylvania Perelman School of Medicine, Philadelphia, PA.
Scarlett L Bellamy
Athena F Zuppa
Marc Gastonguay
Ganesh S Moorthy
Bakgaki R Ratshaa
Xiaoyan Han
Andrew P Steenhoff
Mosepele Mosepele
Brian L Strom
Richard Aplenc
Gregory P Bisson
Robert Gross
Children's Hospital of Philadelphia · USUniversity of Pennsylvania · USUniversity of Botswana · BWDrexel University · USMetrum Research Group (United States) · USRutgers, The State University of New Jersey · US

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI DAVID S METZGER · 1999 to 2026
$78.6M
Penn Mental Health AIDS Research CenterP30MH097488 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI Karine Dube · 2013 to 2026
$23.5M
Pharmacogenetics and HIV treatment outcomesR01MH080701 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI GROSS, ROBERT · 2009 to 2013
$2.6M
NIAID NIH HHS P30 AI045008NIMH NIH HHS P30 MH097488NIMH NIH HHS R01 MH080701
6 · The paper itself

Abstract

backgroundCYP2B6 polymorphisms that affect efavirenz (EFV) concentrations are common, but the effect of this polymorphism on HIV virologic failure in clinical practice settings has not fully been elucidated. Our objective was to investigate the relationship between the CYP2B6 516G>T genotype and late virologic failure in patients treated with EFV in Gaborone, Botswana.

settingWe performed a case-control study that included 1338 HIV-infected black Batswana on EFV-based antiretroviral therapy (ART). Patients were approached for enrollment during regular visits at one of the outpatient HIV clinics between July 2013 and April 2014.

methodsCases experienced late HIV failure, defined as plasma HIV RNA >1000 copies/mL after maintaining viral suppression (<400 copies/mL) for at least 6 months. For each case, a total of 4 control patients were randomly sampled from the same population. Controls had plasma HIV RNA <400 copies/mL on ART for at least 6 months. Logistic regression was used to determine the adjusted odds of late HIV failure by 516G>T genotype.

resultsAfter adjustment for the confounding variables age and CD4 count, the CYP2B6 516 T-allele was protective against late HIV virologic breakthrough, adjusted OR 0.70; 95% CI: 0.50 to 0.97.

conclusionThe CYP2B6 516 T-allele was protective against late virologic breakthrough in patients with initial (6 month) HIV RNA suppression on EFV-based ART. Future studies are needed to assess long-term viral benefits of identifying and offering EFV containing ART to black African HIV-infected patients with CYP2B6 T-alleles, especially given the wider availability of a single pill EFV in this setting.

Indexed as

AdultAlkynesAllelesAnti-HIV AgentsBenzoxazinesBlack PeopleBotswanaCase-Control StudiesCD4 Lymphocyte CountCyclopropanesCytochrome P-450 CYP2B6Cytochrome P-450 CYP2B6 InducersFemaleGenotypeHIV-1HIV InfectionsAlkynesAnti-HIV AgentsBenzoxazinesCyclopropanesCYP2B6 protein, humanCytochrome P-450 CYP2B6Cytochrome P-450 CYP2B6 Inducersefavirenz

Identifiers

PMID28481785
PMCPMC5524513
OpenAlexW2611658746

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.