Evidence map›Paper›PMID 28481730›Full record

ArticleOmics : a journal of integrative biology2017

Next-Generation Sequencing Reveals Novel Mutations in X-linked Intellectual Disability.

Babylakshmi Muthusamy, Lakshmi Dhevi N Selvan, Thong T Nguyen, Jesna Manoj, Eric W Stawiski, Bijay S Jaiswal, Weiru Wang, Remya Raja, Vedam Laxmi Ramprasad, Ravi Gupta and 9 more

Abstract read
In one paragraph

Article in Omics : a journal of integrative biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Review
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  4. RettDb: the Rett syndrome omics database to navigate the Rett syndrome genomic landscape.Database : the journal of biological databases and curation · 2024
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  12. A splice altering variant in NDRG1 gene causes Charcot-Marie-Tooth disease, type 4D.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2022
    Article
  13. Article
  14. Article
  15. A novel loss of function mutation in adaptor protein complex 4, subunit mu-1 causing autosomal recessive spastic paraplegia 50.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2021
    Article
  16. Article
  17. Article
  18. Frontiers in cell and developmental biology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Babylakshmi Muthusamy1 Institute of Bioinformatics , International Technology Park, Bangalore, India .
Lakshmi Dhevi N Selvan1 Institute of Bioinformatics , International Technology Park, Bangalore, India .
Thong T Nguyen3 Molecular Biology Department, Genentech, Inc. , South San Francisco, California.
Jesna Manoj4 Department of Child and Adolescent Psychiatry, NIMHANS , Bangalore, India .
Eric W Stawiski3 Molecular Biology Department, Genentech, Inc. , South San Francisco, California.
Bijay S Jaiswal3 Molecular Biology Department, Genentech, Inc. , South San Francisco, California.
Weiru Wang6 Department of Structural Biology, Genentech, Inc. , South San Francisco, California.
Remya Raja1 Institute of Bioinformatics , International Technology Park, Bangalore, India .
Vedam Laxmi Ramprasad7 MedGenome , Bangalore, India .
Ravi Gupta7 MedGenome , Bangalore, India .
Sakthivel Murugan7 MedGenome , Bangalore, India .
Jayarama S Kadandale8 Centre for Human Genetics , Biotech Park, Bangalore, India .
T S Keshava Prasad1 Institute of Bioinformatics , International Technology Park, Bangalore, India .
Kavita Reddy1 Institute of Bioinformatics , International Technology Park, Bangalore, India .
Andrew Peterson3 Molecular Biology Department, Genentech, Inc. , South San Francisco, California.
Akhilesh Pandey11 McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine , Baltimore, Maryland.
Somasekar Seshagiri3 Molecular Biology Department, Genentech, Inc. , South San Francisco, California.
Satish Chandra Girimaji4 Department of Child and Adolescent Psychiatry, NIMHANS , Bangalore, India .
Harsha Gowda1 Institute of Bioinformatics , International Technology Park, Bangalore, India .

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Robust diagnostics for many human genetic disorders are much needed in the pursuit of global personalized medicine. Next-generation sequencing now offers new promise for biomarker and diagnostic discovery, in developed as well as resource-limited countries. In this broader global health context, X-linked intellectual disability (XLID) is an inherited genetic disorder that is associated with a range of phenotypes impacting societies in both developed and developing countries. Although intellectual disability arises due to diverse causes, a substantial proportion is caused by genomic alterations. Studies have identified causal XLID genomic alterations in more than 100 protein-coding genes located on the X-chromosome. However, the causes for a substantial number of intellectual disability and associated phenotypes still remain unknown. Identification of causative genes and novel mutations will help in early diagnosis as well as genetic counseling of families. Advent of next-generation sequencing methods has accelerated the discovery of new genes involved in mental health disorders. In this study, we analyzed the exomes of three families from India with nonsyndromic XLID comprising seven affected individuals. The affected individuals had varying degrees of intellectual disability, microcephaly, and delayed motor and language milestones. We identified potential causal variants in three XLID genes, including PAK3 (V294M), CASK (complex structural variant), and MECP2 (P354T). Our findings reported in this study extend the spectrum of mutations and phenotypes associated with XLID, and calls for further studies of intellectual disability and mental health disorders with use of next-generation sequencing technologies.

Indexed as

Genes, X-LinkedAdultChildChild, PreschoolDNAExomeExome SequencingFemaleGenetic Association StudiesGenetic Diseases, X-LinkedGuanylate KinasesHigh-Throughput Nucleotide SequencingHumansIndiaIntellectual DisabilityMaleCASK kinasesDNAGuanylate KinasesMECP2 protein, humanMethyl-CpG-Binding Protein 2p21-Activated KinasesPAK3 protein, humandiagnostic medicinegenotype–phenotype associationmental retardationneurodevelopmental disordersnext-generation sequencing

Identifiers

PMID28481730
PMCPMC5586158

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.