Evidence map›Paper›PMID 28481221›Full record

ArticleThe Journal of clinical investigation2017

Gene expression and mutation-guided synthetic lethality eradicates proliferating and quiescent leukemia cells.

Margaret Nieborowska-Skorska, Katherine Sullivan, Yashodhara Dasgupta, Paulina Podszywalow-Bartnicka, Grazyna Hoser, Silvia Maifrede, Esteban Martinez, Daniela Di Marcantonio, Elisabeth Bolton-Gillespie, Kimberly Cramer-Morales and 22 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 75 citations in OpenAlex.

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  15. DNA Repair Genes Polymorphisms: Impact on Acute Myeloid Leukemia Patients Outcome.Asian Pacific journal of cancer prevention : APJCP · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors at 18 institutions in 5 countries.

Margaret Nieborowska-SkorskaTemple University Lewis Katz School of Medicine, Department of Microbiology and Immunology and Fels Institute for Cancer Research & Molecular Biology, Philadelphia, Pennsylvania, USA.
Katherine SullivanTemple University Lewis Katz School of Medicine, Department of Microbiology and Immunology and Fels Institute for Cancer Research & Molecular Biology, Philadelphia, Pennsylvania, USA.
Yashodhara DasguptaTemple University Lewis Katz School of Medicine, Department of Microbiology and Immunology and Fels Institute for Cancer Research & Molecular Biology, Philadelphia, Pennsylvania, USA.
Paulina Podszywalow-BartnickaNencki Institute of Experimental Biology, Warsaw, Poland.
Grazyna HoserThe Center of Postgraduate Medical Education, Laboratory of Flow Cytometry, Warsaw, Poland.
Silvia MaifredeTemple University Lewis Katz School of Medicine, Department of Microbiology and Immunology and Fels Institute for Cancer Research & Molecular Biology, Philadelphia, Pennsylvania, USA.
Esteban MartinezResearch Institute of Fox Chase Cancer Center, Immune Cell Development and Host Defense, Philadelphia, Pennsylvania, USA.
Daniela Di MarcantonioResearch Institute of Fox Chase Cancer Center, Immune Cell Development and Host Defense, Philadelphia, Pennsylvania, USA.
Elisabeth Bolton-GillespieTemple University Lewis Katz School of Medicine, Department of Microbiology and Immunology and Fels Institute for Cancer Research & Molecular Biology, Philadelphia, Pennsylvania, USA.
Kimberly Cramer-MoralesTemple University Lewis Katz School of Medicine, Department of Microbiology and Immunology and Fels Institute for Cancer Research & Molecular Biology, Philadelphia, Pennsylvania, USA.
Jaewong LeeDepartment of Laboratory Medicine, UCSF, San Francisco, California, USA.
Min LiDepartment of Cancer Biology, Beckman Research Institute, City of Hope, Duarte, California, USA.
Artur SlupianekTemple University Lewis Katz School of Medicine, Department of Microbiology and Immunology and Fels Institute for Cancer Research & Molecular Biology, Philadelphia, Pennsylvania, USA.
Daniel GritsyukTemple University Lewis Katz School of Medicine, Department of Microbiology and Immunology and Fels Institute for Cancer Research & Molecular Biology, Philadelphia, Pennsylvania, USA.
Sabine Cerny-ReitererMedical University of Vienna and Ludwig Boltzmann-Cluster Oncology, and Department of Internal Medicine I, Division of Hematology and Hemostaseology, Vienna, Austria.
Ilona SeferynskaDepartment of Hematology, Institute of Hematology and Blood Transfusion, Warsaw, Poland.
Tomasz StoklosaDepartment of Immunology, Medical University of Warsaw, Warsaw, Poland.
Lars BullingerDepartment of Internal Medicine III, University of Ulm, Ulm, Germany.
Huaqing ZhaoTemple University Lewis Katz School of Medicine, Department of Clinical Sciences, Philadelphia, Pennsylvania, USA.
Vera GorbunovaDepartment of Biology, University of Rochester, Rochester, New York, USA.
Katarzyna PiwockaNencki Institute of Experimental Biology, Warsaw, Poland.
Peter ValentMedical University of Vienna and Ludwig Boltzmann-Cluster Oncology, and Department of Internal Medicine I, Division of Hematology and Hemostaseology, Vienna, Austria.
Curt I CivinCenter for Stem Cell Biology & Regenerative Medicine, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Markus MuschenDepartment of Laboratory Medicine, UCSF, San Francisco, California, USA.
John E DickPrincess Margaret Cancer Centre, University Health Network (UHN), Toronto, Ontario, Canada; Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Jean Cy WangPrincess Margaret Cancer Centre, UHN, Toronto, Ontario, Canada; Department of Medicine, University of Toronto, Toronto, Ontario, Canada; Division of Medical Oncology and Hematology, UHN, Toronto, Ontario, Canada.
Smita BhatiaDepartment of Pediatrics.
Ravi BhatiaDivision of Hematology-Oncology, Department of Medicine, University of Alabama Birmingham, Birmingham, Alabama, USA.
Kolja EppertResearch Institute of the McGill University Health Centre, Montreal, Quebec, Canada.
Mark D MindenPrincess Margaret Cancer Center, Ontario Cancer Institute, Toronto, Ontario, Canada.
Stephen M SykesResearch Institute of Fox Chase Cancer Center, Immune Cell Development and Host Defense, Philadelphia, Pennsylvania, USA.
Tomasz SkorskiTemple University Lewis Katz School of Medicine, Department of Microbiology and Immunology and Fels Institute for Cancer Research & Molecular Biology, Philadelphia, Pennsylvania, USA.
Temple University · USFox Chase Cancer Center · USInstytut Biologii Doświadczalnej im. Marcelego Nenckiego · PLLudwig Boltzmann Institute for Cardiovascular Research · ATUniversity of California, San Francisco · USCity of Hope · USInstytut Hematologii i Transfuzjologi · PLMcGill University Health Centre · CAMedical University of Warsaw · PLOntario Institute for Cancer Research · CAPediatric Oncology Group · CAPediatrics and Genetics · USPostgraduate School of Molecular Medicine · PLUniversität Ulm · DEUniversity Health Network · CAUniversity of Alabama at Birmingham · USUniversity of Maryland, Baltimore · USUniversity of Rochester · US

Funding

University of Texas M.D. Anderson Cancer SPORE-LeukemiaP50CA100632 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KONOPLEVA, MARINA Y · 2003 to 2023
$43.7M
The role of hyaluronan in longevity and cancer resistance of longest-lived rodentP01AG047200 · NIA · UNIVERSITY OF ROCHESTER · PI JAN VIJG · 2014 to 2026
$36.9M
Metabolic gatekeepers in B-cell malignanciesR35CA197628 · NCI · YALE UNIVERSITY · PI Markus Müschen · 2016 to 2026
$11.7M
The role of SIRT6 posttranslational modifications in aging and genome stability. Supplement: Testing SIRT6 activators as potential Alzheimer's disease therapy.R01AG027237 · NIA · UNIVERSITY OF ROCHESTER · PI Vera Gorbunova · 2006 to 2026
$6.2M
Targeted activation of autoimmune checkpoints in B cell malignanciesR01CA157644 · NCI · YALE UNIVERSITY · PI Markus Müschen · 2011 to 2026
$5.7M
Training In Tumor VirologyT32CA115299 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ROBERTSON, ERLE S. · 2006 to 2021
$4.7M
Targeting DNA repair to eradicate TKi-refractory/resistant CML and Ph+ALLR01CA186238 · NCI · TEMPLE UNIV OF THE COMMONWEALTH · PI SKORSKI, TOMASZ · 2014 to 2024
$4.5M
CD25-mediated feedback control of BCR-signaling and its oncogenic mimicsR01CA213138 · NCI · YALE UNIVERSITY · PI MÜSCHEN, MARKUS · 2017 to 2022
$1.9M
"BCR/ABL-PI-3k-ROS pathway induce genomic instability ...."R01CA134458 · NCI · TEMPLE UNIV OF THE COMMONWEALTH · PI SKORSKI, TOMASZ · 2010 to 2014
$1.5M
Foxo transcription factors are required for maintenance of acute myeloid leukemiaR00CA158461 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI SYKES, STEPHEN MATTHEW · 2012 to 2014
$641k
NCI NIH HHS P50 CA100632NCI NIH HHS R00 CA158461NCI NIH HHS R01 CA134458NCI NIH HHS R01 CA157644NCI NIH HHS R01 CA186238NCI NIH HHS R01 CA213138NCI NIH HHS R35 CA197628NCI NIH HHS T32 CA115299NIA NIH HHS P01 AG047200NIA NIH HHS R01 AG027237
6 · The paper itself

Abstract

Quiescent and proliferating leukemia cells accumulate highly lethal DNA double-strand breaks that are repaired by 2 major mechanisms: BRCA-dependent homologous recombination and DNA-dependent protein kinase-mediated (DNA-PK-mediated) nonhomologous end-joining, whereas DNA repair pathways mediated by poly(ADP)ribose polymerase 1 (PARP1) serve as backups. Here we have designed a personalized medicine approach called gene expression and mutation analysis (GEMA) to identify BRCA- and DNA-PK-deficient leukemias either directly, using reverse transcription-quantitative PCR, microarrays, and flow cytometry, or indirectly, by the presence of oncogenes such as BCR-ABL1. DNA-PK-deficient quiescent leukemia cells and BRCA/DNA-PK-deficient proliferating leukemia cells were sensitive to PARP1 inhibitors that were administered alone or in combination with current antileukemic drugs. In conclusion, GEMA-guided targeting of PARP1 resulted in dual cellular synthetic lethality in quiescent and proliferating immature leukemia cells, and is thus a potential approach to eradicate leukemia stem and progenitor cells that are responsible for initiation and manifestation of the disease. Further, an analysis of The Cancer Genome Atlas database indicated that this personalized medicine approach could also be applied to treat numerous solid tumors from individual patients.

Indexed as

Cell ProliferationAnimalsAntineoplastic AgentsCell Line, TumorCell Transformation, NeoplasticCricetinaeDNA Breaks, Double-StrandedDNA End-Joining RepairGenes, ablGenes, BRCA1Genes, BRCA2Genes, LethalHumansLeukemiaMiceMice, Inbred NODAntineoplastic AgentsolaparibPhthalazinesPiperazinesPoly(ADP-ribose) Polymerase Inhibitorstalazoparib

Identifiers

PMID28481221
PMCPMC5451241
OpenAlexW2610261021

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.