Evidence map›Paper›PMID 28477138›Full record

ArticleGeroScience2017

Role of DNA methylation in the dietary restriction mediated cellular memory.

Archana Unnikrishnan, Jordan Jackson, Stephanie A Matyi, Niran Hadad, Benjamin Wronowski, Constantin Georgescu, Karla P Garrett, Jonathan D Wren, Willard M Freeman, Arlan Richardson

Abstract read
In one paragraph

Article in GeroScience, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Caloric restriction induced epigenetic effects on aging.Frontiers in cell and developmental biology · 2022
    Review
  7. Article
  8. Article
  9. Sex and Exposure to Postnatal Chlorpyrifos Influence the Epigenetics of Feeding-Related Genes in a TransgenicInternational journal of environmental research and public health · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. The Impact of Caloric Restriction on the Epigenetic Signatures of Aging.International journal of molecular sciences · 2019
    Review
  16. The role of DNA methylation in epigenetics of aging.Pharmacology & therapeutics · 2019
    Review
  17. Review
  18. Mechanisms of Vascular Aging.Circulation research · 2018
    Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Archana UnnikrishnanDepartment of Geriatric Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA.
Jordan JacksonDepartment of Geriatric Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA.
Stephanie A MatyiDepartment of Geriatric Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA.
Niran HadadReynolds Oklahoma Center on Aging, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA.
Benjamin WronowskiReynolds Oklahoma Center on Aging, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA.
Constantin GeorgescuDepartment of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA.
Karla P GarrettDepartment of Geriatric Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA.
Jonathan D WrenDepartment of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA.
Willard M FreemanReynolds Oklahoma Center on Aging, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA.
Arlan RichardsonDepartment of Geriatric Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA. Arlan-richardson@ouhsc.edu.

Funding

Targeted DNA Methylation and Mitochondrial Heteroplasmy CoreP30AG050911 · NIA · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI William Edmund Sonntag · 2015 to 2026
$13.9M
Interaction of Genotype and Level of Dietary Restriction on Lifespan and AgingR01AG045693 · NIA · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI RICHARDSON, ARLAN G. · 2014 to 2018
$3.7M
NIA NIH HHS P30 AG050911NIA NIH HHS R01 AG045693
6 · The paper itself

Abstract

An important facet of dietary restriction (DR) that has been largely overlooked is that DR can have early effects that create a cellular memory, which persists even when DR is discontinued. The goal of this study was to determine if DNA methylation played a role in the cellular memory of DR by examining the effect of short-term DR on gene expression and DNA methylation and determining if the changes in expression and DNA methylation persist when DR is discontinued and mice returned to ad libitum (AL) feeding. We show that DR can induce substantial changes in gene expression within 1 month of its implementation in various tissues, and more interestingly, ~19-50% of these changes in gene expression persist across the tissues even when DR is discontinued. We then determined whether DR induced changes in DNA methylation in the promoter of three candidate genes identified from our gene expression analysis (Pomc, Hsph1, and Nts1) that correlated with the changes in the expression of these genes. Decreased methylation at three specific CG sites in the promoter of the Nts1 gene encompassing the distal consensus AP-1 site was correlated with increased Nts1 expression. Both the promoter hypomethylation and increased Nts1 expression persisted even after DR was discontinued and mice fed AL, supporting our hypothesis that DNA methylation could play a role in the memory effect of DR. The changes in DNA methylation in the Nts1 gene are likely to occur in intestinal stem cells and could play a role in preserving the intestinal stem cell pool in DR mice.

Indexed as

Caloric RestrictionDNA MethylationGene Expression RegulationAnimalsFoodMiceModels, AnimalPromoter Regions, GeneticDietary restrictionDNA methylationEpigeneticsGene expressionStem cellsTranscriptome

Identifiers

PMID28477138
PMCPMC5505897

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.