Evidence map›Paper›PMID 28477114›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2017

Quantitative and Dynamic Imaging of ATM Kinase Activity by Bioluminescence Imaging.

Shyam Nyati, Grant Young, Brian Dale Ross, Alnawaz Rehemtulla

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Shyam NyatiCenter for Molecular Imaging, University of Michigan, Ann Arbor, MI, 48109, USA. shyamnya@med.umich.edu.
Grant YoungDepartment of Radiation Oncology, University of Michigan, Ann Arbor, MI, 48109, USA.
Brian Dale RossCenter for Molecular Imaging, University of Michigan, Ann Arbor, MI, 48109, USA.
Alnawaz RehemtullaCenter for Molecular Imaging, University of Michigan, Ann Arbor, MI, 48109, USA.
University of Michigan–Ann Arbor · US

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THEODORE S LAWRENCE · 1988 to 2026
$178.2M
Presurgical Planning with Optimized Verbalized Speech Activation Studies inP01CA087634 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FESSLER, JEFFREY A · 2002 to 2013
$14.8M
Efficacy of PDI inhibitors in glioblastomaR01CA193690 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NEAMATI, NOURI, REHEMTULLA, ALNAWAZ · 2015 to 2019
$2.4M
NCI NIH HHS P01 CA087634NCI NIH HHS P30 CA046592NCI NIH HHS R01 CA193690
6 · The paper itself

Abstract

Ataxia telangiectasia mutated (ATM) is a serine/threonine kinase critical to the cellular DNA damage response, including DNA double strand breaks (DSBs). ATM activation results in the initiation of a complex cascade of events facilitating DNA damage repair, cell cycle checkpoint control, and survival. Traditionally, protein kinases have been analyzed in vitro using biochemical methods (kinase assays using purified proteins or immunological assays) requiring a large number of cells and cell lysis. Genetically encoded biosensors based on optical molecular imaging such as fluorescence or bioluminescence have been developed to enable interrogation of kinase activities in live cells with a high signal to background. We have genetically engineered a hybrid protein whose bioluminescent activity is dependent on the ATM-mediated phosphorylation of a substrate. The engineered protein consists of the split luciferase-based protein complementation pair with a CHK2 (a substrate for ATM kinase activity) target sequence and a phospho-serine/threonine-binding domain, FHA2, derived from yeast Rad53. Phosphorylation of the serine residue within the target sequence by ATM would lead to its interaction with the phospho-serine-binding domain, thereby preventing complementation of the split luciferase pair and loss of reporter activity. Bioluminescence imaging of reporter-expressing cells in cultured plates or as mouse xenografts provides a quantitative surrogate for ATM kinase activity and therefore the cellular DNA damage response in a noninvasive, dynamic fashion.

Indexed as

Ataxia Telangiectasia Mutated ProteinsBiosensing TechniquesDNA Breaks, Double-StrandedDNA DamageHumansLuminescent MeasurementsMolecular ImagingPhosphorylationAtaxia Telangiectasia Mutated ProteinsATMBioluminescenceComplementationIn vivoKinase activityLive cellMolecular imagingReporterSplit-luciferase

Identifiers

PMID28477114
PMCPMC6454928
OpenAlexW2611705533

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.