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ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2017

Bayesian QTL mapping using genome-wide SSR markers and segregating population derived from a cross of two commercial F

Akio Ohyama, Kenta Shirasawa, Hiroshi Matsunaga, Satomi Negoro, Koji Miyatake, Hirotaka Yamaguchi, Tsukasa Nunome, Hiroyoshi Iwata, Hiroyuki Fukuoka, Takeshi Hayashi

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Dissection of complex traits of tomato in the post-genome era.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Akio OhyamaNational Agriculture and Food Research Organization (NARO), Institute of Vegetable and Floriculture Science (NIVFS), 3-1-1 Kannondai, Tsukuba, Ibaraki, 305-8519, Japan. aohyama@affrc.go.jp.ORCID http://orcid.org/0000-0002-7859-2240
Kenta ShirasawaKazusa DNA Research Institute, 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba, 292-0818, Japan.
Hiroshi MatsunagaNARO, NIVFS, 360 Kusawa, Ano, Tsu, Mie, 514-2392, Japan.
Satomi NegoroNARO, NIVFS, 360 Kusawa, Ano, Tsu, Mie, 514-2392, Japan.
Koji MiyatakeNARO, NIVFS, 360 Kusawa, Ano, Tsu, Mie, 514-2392, Japan.
Hirotaka YamaguchiNARO, NIVFS, 360 Kusawa, Ano, Tsu, Mie, 514-2392, Japan.
Tsukasa NunomeNARO, NIVFS, 360 Kusawa, Ano, Tsu, Mie, 514-2392, Japan.
Hiroyoshi IwataDepartment of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo, Tokyo, 113-8657, Japan.
Hiroyuki FukuokaNARO, Institute of Vegetable and Tea Science (NIVTS), 360 Kusawa, Ano, Tsu, Mie, 514-2392, Japan.
Takeshi HayashiNARO, Institute of Crop Science (NICS), 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8518, Japan. hayatk@affrc.go.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageUsing newly developed euchromatin-derived genomic SSR markers and a flexible Bayesian mapping method, 13 significant agricultural QTLs were identified in a segregating population derived from a four-way cross of tomato. So far, many QTL mapping studies in tomato have been performed for progeny obtained from crosses between two genetically distant parents, e.g., domesticated tomatoes and wild relatives. However, QTL information of quantitative traits related to yield (e.g., flower or fruit number, and total or average weight of fruits) in such intercross populations would be of limited use for breeding commercial tomato cultivars because individuals in the populations have specific genetic backgrounds underlying extremely different phenotypes between the parents such as large fruit in domesticated tomatoes and small fruit in wild relatives, which may not be reflective of the genetic variation in tomato breeding populations. In this study, we constructed F

Indexed as

Microsatellite RepeatsQuantitative Trait LociBayes TheoremChromosome MappingCrosses, GeneticExpressed Sequence TagsGenetic LinkageGenetic MarkersGenetic VariationGenotypeModels, GeneticPhenotypePlant BreedingSolanum lycopersicumGenetic Markers

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.