Evidence map›Paper›PMID 28476890›Full record

ArticleThe Journal of biological chemistry2017

Sequence imperfections and base triplet recognition by the Rad51/RecA family of recombinases.

Ja Yil Lee, Justin B Steinfeld, Zhi Qi, YoungHo Kwon, Patrick Sung, Eric C Greene

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

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  13. Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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  16. Mismatch sensing by nucleofilament deciphers mechanism of RecA-mediated homologous recombination.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. Article
  18. Rad51 facilitates filament assembly of meiosis-specific Dmc1 recombinase.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ja Yil LeeFrom the Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032 and.
Justin B SteinfeldFrom the Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032 and.
Zhi QiFrom the Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032 and.
YoungHo Kwonthe Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06510.
Patrick Sungthe Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06510.
Eric C GreeneFrom the Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032 and ecg2108@cumc.columbia.edu.
Columbia University · USYale University · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
YEAST DNA REPAIR GENES AND PROTEINS OF THE RAD52 GROUPR01ES007061 · NIEHS · YALE UNIVERSITY · PI Patrick Sung · 1995 to 2026
$9.4M
Protein purification instrumentation in support of single molecule studies of genome integrityR35GM118026 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GREENE, ERIC C · 2016 to 2025
$5.7M
Understanding the Basis of Fidelity in Eukaryotic RecombinasesF31CA210663 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI STEINFELD, JUSTIN B · 2016 to 2018
$128k
NCI NIH HHS F31 CA210663NCI NIH HHS P01 CA092584NIEHS NIH HHS R01 ES007061NIGMS NIH HHS R35 GM118026
6 · The paper itself

Abstract

Homologous recombination plays key roles in double-strand break repair, rescue, and repair of stalled replication forks and meiosis. The broadly conserved Rad51/RecA family of recombinases catalyzes the DNA strand invasion reaction that takes place during homologous recombination. We have established single-stranded (ss)DNA curtain assays for measuring individual base triplet steps during the early stages of strand invasion. Here, we examined how base triplet stepping by RecA, Rad51, and Dmc1 is affected by DNA sequence imperfections, such as single and multiple mismatches, abasic sites, and single nucleotide insertions. Our work reveals features of base triplet stepping that are conserved among these three phylogenetic lineages of the Rad51/RecA family and also reveals lineage-specific behaviors reflecting properties that are unique to each recombinase. These findings suggest that Dmc1 is tolerant of single mismatches, multiple mismatches, and even abasic sites, whereas RecA and Rad51 are not. Interestingly, the presence of single nucleotide insertion abolishes recognition of an adjacent base triplet by all three recombinases. On the basis of these findings, we describe models for how sequence imperfections may affect base triplet recognition by Rad51/RecA family members, and we discuss how these models and our results may relate to the different biological roles of RecA, Rad51, and Dmc1.

Indexed as

Models, ChemicalCell Cycle ProteinsDNA-Binding ProteinsDNA, Single-StrandedEscherichia coliEscherichia coli ProteinsRad51 RecombinaseRec A RecombinasesRecombination, GeneticSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCell Cycle ProteinsDMC1 protein, S cerevisiaeDNA-Binding ProteinsDNA, Single-StrandedEscherichia coli ProteinsRAD51 protein, S cerevisiaeRad51 RecombinaseRec A RecombinasesSaccharomyces cerevisiae ProteinsDmc1DNA repairhomologous recombinationmicroscopyprotein-DNA interactionRad51RecAsingle-molecule biophysics

Identifiers

PMID28476890
PMCPMC5491793
OpenAlexW2611210472

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.