Evidence map›Paper›PMID 28476147›Full record

ArticleBMC genomics2017

Genome-wide analysis and characterization of Aux/IAA family genes related to fruit ripening in papaya (Carica papaya L.).

Kaidong Liu, Changchun Yuan, Shaoxian Feng, Shuting Zhong, Haili Li, Jundi Zhong, Chenjia Shen, Jinxiang Liu

Abstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Genome-Wide Analysis of the Auxin/Indoleacetic Acid (International journal of molecular sciences · 2024
    Article
  10. Genome-Wide Analysis ofInternational journal of molecular sciences · 2024
    Article
  11. Article
  12. Article
  13. Genome-Wide Identification and Analysis of the Aux/IAA Gene Family inInternational journal of molecular sciences · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Bioinformatics Study ofPlants (Basel, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kaidong LiuLife Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong, 524048, China. liukaidong2001@126.com.ORCID 0000-0003-4078-739X
Changchun YuanLife Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong, 524048, China. yuanchangchun@163.com.
Shaoxian FengLife Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong, 524048, China.
Shuting ZhongLife Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong, 524048, China.
Haili LiLife Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong, 524048, China.
Jundi ZhongLife Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong, 524048, China.
Chenjia ShenCollege of Life and Environmental Science, Hangzhou Normal University, Hangzhou, 310036, China.
Jinxiang LiuLife Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong, 524048, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAuxin/indole-3-acetic acid (Aux/IAA) family genes encode short-lived nuclear proteins that mediate the responses of auxin-related genes and are involved in several plant developmental and growth processes. However, how Aux/IAA genes function in the fruit development and ripening of papaya (Carica papaya L.) is largely unknown.

resultsIn this study, a comprehensive identification and a distinctive expression analysis of 18 C. papaya Aux/IAA (CpIAA) genes were performed using newly updated papaya reference genome data. The Aux/IAA gene family in papaya is slightly smaller than that in Arabidopsis, but all of the phylogenetic subfamilies are represented. Most of the CpIAA genes are responsive to various phytohormones and expressed in a tissues-specific manner. To understand the putative biological functions of the CpIAA genes involved in fruit development and ripening, quantitative real-time PCR was used to test the expression profiling of CpIAA genes at different stages. Furthermore, an IAA treatment significantly delayed the ripening process in papaya fruit at the early stages. The expression changes of CpIAA genes in ACC and 1-MCP treatments suggested a crosstalk between auxin and ethylene during the fruit ripening process of papaya.

conclusionsOur study provided comprehensive information on the Aux/IAA family in papaya, including gene structures, phylogenetic relationships and expression profiles. The involvement of CpIAA gene expression changes in fruit development and ripening gives us an opportunity to understand the roles of auxin signaling in the maturation of papaya reproductive organs.

Indexed as

GenomicsAmino Acid SequenceCaricaFruitGenome, PlantIndoleacetic AcidsPhylogenyPlant ProteinsPromoter Regions, GeneticIndoleacetic AcidsPlant ProteinsAux/IAA familyAuxinExpression profileFruit ripeningPapaya

Identifiers

PMID28476147
PMCPMC5420106

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.