Evidence map›Paper›PMID 28475872›Full record

ArticleMolecular cell2017

RNA Targeting by Functionally Orthogonal Type VI-A CRISPR-Cas Enzymes.

Alexandra East-Seletsky, Mitchell R O'Connell, David Burstein, Gavin J Knott, Jennifer A Doudna

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 149 papers.

0numbers the graph read from it
0cells of the map it votes in
149citing papers in PubMed
11.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

149 citing papers in PubMed, 292 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Machine Learning for CRISPR-Based Diagnostics.International journal of molecular sciences · 2026
    Review
  5. Article
  6. Towards deployable CRISPR-based nucleic acid detection.Progress in biomedical engineering (Bristol, England) · 2026
    Review
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  8. Article
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  17. Review
  18. Article
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89 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Alexandra East-SeletskyDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Mitchell R O'ConnellDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
David BursteinDepartment of Earth and Planetary Sciences, University of California, Berkeley, CA 94720, USA.
Gavin J KnottDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Jennifer A DoudnaDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA; Department of Chemistry, University of California, Berkeley, CA 94720, USA; Howard Hughes Medical Institute, University of California, Berkeley, CA 94720, USA; Innovative Genomics Institute, University of California, Berkeley, CA 94720, USA; MBIB Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. Electronic address: doudna@berkeley.edu.
University of California, Berkeley · USHoward Hughes Medical Institute · USPlanetary Science Institute · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

CRISPR adaptive immunity pathways protect prokaryotic cells against foreign nucleic acids using CRISPR RNA (crRNA)-guided nucleases. In type VI-A CRISPR-Cas systems, the signature protein Cas13a (formerly C2c2) contains two separate ribonuclease activities that catalyze crRNA maturation and ssRNA degradation. The Cas13a protein family occurs across different bacterial phyla and varies widely in both protein sequence and corresponding crRNA sequence conservation. Although grouped phylogenetically together, we show that the Cas13a enzyme family comprises two distinct functional groups that recognize orthogonal sets of crRNAs and possess different ssRNA cleavage specificities. These functional distinctions could not be bioinformatically predicted, suggesting more subtle co-evolution of Cas13a enzymes. Additionally, we find that Cas13a pre-crRNA processing is not essential for ssRNA cleavage, although it enhances ssRNA targeting for crRNAs encoded internally within the CRISPR array. We define two Cas13a protein subfamilies that can operate in parallel for RNA detection both in bacteria and for diagnostic applications.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsRNA Processing, Post-TranscriptionalBacterial ProteinsCRISPR-Associated ProteinsEscherichia coliNucleic Acid ConformationPhylogenyRibonucleasesRNA, BacterialRNA PrecursorsRNA StabilityStructure-Activity RelationshipSubstrate SpecificityBacterial ProteinsCRISPR-Associated ProteinsRibonucleasesRNA, BacterialRNA Precursors

Identifiers

PMID28475872
PMCPMC5999320
OpenAlexW2610767416

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.