Evidence map›Paper›PMID 28475654›Full record

ArticlePloS one2017

Bacterial community and arsenic functional genes diversity in arsenic contaminated soils from different geographic locations.

Yunfu Gu, Joy D Van Nostrand, Liyou Wu, Zhili He, Yujia Qin, Fang-Jie Zhao, Jizhong Zhou

Erratum issuedAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
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  5. Article
  6. Review
  7. New Arsenite Oxidase Gene (Frontiers in microbiology · 2021
    Article
  8. Article
  9. Article
  10. Article
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  12. Review
  13. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Yunfu GuDepartment of Microbiology, College of Resources Sciences and Technology, Sichuan Agricultural University, Chengdu, China.
Joy D Van NostrandDepartment of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America.
Liyou WuDepartment of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America.
Zhili HeDepartment of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America.
Yujia QinDepartment of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America.
Fang-Jie ZhaoCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Jizhong ZhouDepartment of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To understand how soil microbial communities and arsenic (As) functional genes respond to soil arsenic (As) contamination, five soils contaminated with As at different levels were collected from diverse geographic locations, incubated for 54 days under flooded conditions, and examined by both MiSeq sequencing of 16S rRNA gene amplicons and functional gene microarray (GeoChip 4.0). The results showed that both bacterial community structure and As functional gene structure differed among geographical locations. The diversity of As functional genes correlated positively with the diversity of 16S rRNA genes (P< 0.05). Higher diversities of As functional genes and 16S rRNA genes were observed in the soils with higher available As. Soil pH, phosphate-extractable As, and amorphous Fe content were the most important factors in shaping the bacterial community structure and As transformation functional genes. Geographic location was also important in controlling both the bacterial community and As transformation functional potential. These findings provide insights into the variation of As transformation functional genes in soils contaminated with different levels of As at different geographic locations, and the impact of environmental As contamination on the soil bacterial community.

Indexed as

Genes, BacterialSoil MicrobiologyArsenicBacteriaGeographyRNA, Ribosomal, 16SSoil PollutantsArsenicRNA, Ribosomal, 16SSoil Pollutants

Identifiers

PMID28475654
PMCPMC5419559

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.