Evidence map›Paper›PMID 28475211›Full record

ArticleBiotechnology and bioengineering2017

Short DNA containing χ sites enhances DNA stability and gene expression in E. coli cell-free transcription-translation systems.

Ryan Marshall, Colin S Maxwell, Scott P Collins, Chase L Beisel, Vincent Noireaux

Open access · greenAbstract read
In one paragraph

Article in Biotechnology and bioengineering, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 113 citations in OpenAlex.

  1. Pooled it
  2. One-pot cloning and protein expression platform for genetic engineering.bioRxiv : the preprint server for biology · 2025
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  9. Review
  10. Article
  11. T7Max transcription system.Journal of biological engineering · 2023
    Article
  12. Review
  13. Cell-Free Display Techniques for Protein Evolution.Advances in biochemical engineering/biotechnology · 2023
    Article
  14. Solid-Phase Cell-Free Protein Synthesis and Its Applications in Biotechnology.Advances in biochemical engineering/biotechnology · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. NgAgo possesses guided DNA nicking activity.Nucleic acids research · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ryan MarshallSchool of Physics and Astronomy, University of Minnesota, Minneapolis, Minnesota 55455.
Colin S MaxwellDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina.
Scott P CollinsDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina.
Chase L BeiselDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina.
Vincent NoireauxSchool of Physics and Astronomy, University of Minnesota, Minneapolis, Minnesota 55455.ORCID 0000-0002-5213-273X
North Carolina State University · USUniversity of Minnesota · US

Funding

Understanding and exploiting the functional diversity of CRISPR-Cas immune systemsR35GM119561 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI BEISEL, CHASE LAWRENCE · 2016 to 2020
$1.9M
NIGMS NIH HHS R35 GM119561
6 · The paper itself

Abstract

Escherichia coli cell-free transcription-translation (TXTL) systems offer versatile platforms for advanced biomanufacturing and for prototyping synthetic biological parts and devices. Production and testing could be accelerated with the use of linear DNA, which can be rapidly and cheaply synthesized. However, linear DNA is efficiently degraded in TXTL preparations from E. coli. Here, we show that double-stranded DNA encoding χ sites-eight base-pair sequences preferentially bound by the RecBCD recombination machinery-stabilizes linear DNA and greatly enhances the TXTL-based expression and activity of a fluorescent reporter gene, simple regulatory cascades, and T7 bacteriophage particles. The χ-site DNA and the DNA-binding λ protein Gam yielded similar enhancements, and DNA with as few as four χ sites was sufficient to ensure robust gene expression in TXTL. Given the affordability and scalability of producing the short χ-site DNA, this generalized strategy is expected to advance the broad use of TXTL systems across its many applications. Biotechnol. Bioeng. 2017;114: 2137-2141. © 2017 Wiley Periodicals, Inc.

Indexed as

Cell-Free SystemDNA, BacterialEscherichia coliExodeoxyribonuclease VGene Expression Regulation, BacterialGenetic EngineeringProtein BiosynthesisTranscription, GeneticDNA, BacterialExodeoxyribonuclease VEscherichia coligene circuitsprototypingRecBCDsynthetic biologyTXTL

Identifiers

PMID28475211
PMCPMC5522353
OpenAlexW2610528455

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.