Evidence map›Paper›PMID 28474118›Full record

ArticleJournal of plant research2018

Genome-wide analysis identifies chickpea (Cicer arietinum) heat stress transcription factors (Hsfs) responsive to heat stress at the pod development stage.

Parameswaran Chidambaranathan, Prasanth Tej Kumar Jagannadham, Viswanathan Satheesh, Deshika Kohli, Santosh Halasabala Basavarajappa, Bharadwaj Chellapilla, Jitendra Kumar, Pradeep Kumar Jain, R Srinivasan

Abstract read
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In one paragraph

Article in Journal of plant research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 46 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. An overview of heat stress in Chickpea (Molecular breeding : new strategies in plant improvement · 2025
    Review
  4. Article
  5. Article
  6. StHsfB5 Promotes Heat Resistance by Directly Regulating the Expression ofInternational journal of molecular sciences · 2023
    Article
  7. Article
  8. Article
  9. A Heat Shock Transcription FactorInternational journal of molecular sciences · 2022
    Article
  10. Functional Characterization of Heat Shock Factor (International journal of molecular sciences · 2022
    Article
  11. Article
  12. Article
  13. Heat stress tolerance in peas (Frontiers in plant science · 2022
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Parameswaran ChidambaranathanNational Research Centre on Plant Biotechnology, New Delhi, India.
Prasanth Tej Kumar JagannadhamNational Research Centre on Plant Biotechnology, New Delhi, India.
Viswanathan SatheeshNational Research Centre on Plant Biotechnology, New Delhi, India.
Deshika KohliNational Research Centre on Plant Biotechnology, New Delhi, India.
Santosh Halasabala BasavarajappaDivision of Genetics, Indian Agricultural Research Institute, New Delhi, India.
Bharadwaj ChellapillaDivision of Genetics, Indian Agricultural Research Institute, New Delhi, India.
Jitendra KumarDivision of Genetics, Indian Agricultural Research Institute, New Delhi, India.
Pradeep Kumar JainNational Research Centre on Plant Biotechnology, New Delhi, India.
R SrinivasanNational Research Centre on Plant Biotechnology, New Delhi, India. srinivasan53@gmail.com.
National Research Centre on Plant Biotechnology · INIndian Agricultural Research Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The heat stress transcription factors (Hsfs) play a prominent role in thermotolerance and eliciting the heat stress response in plants. Identification and expression analysis of Hsfs gene family members in chickpea would provide valuable information on heat stress responsive Hsfs. A genome-wide analysis of Hsfs gene family resulted in the identification of 22 Hsf genes in chickpea in both desi and kabuli genome. Phylogenetic analysis distinctly separated 12 A, 9 B, and 1 C class Hsfs, respectively. An analysis of cis-regulatory elements in the upstream region of the genes identified many stress responsive elements such as heat stress elements (HSE), abscisic acid responsive element (ABRE) etc. In silico expression analysis showed nine and three Hsfs were also expressed in drought and salinity stresses, respectively. Q-PCR expression analysis of Hsfs under heat stress at pod development and at 15 days old seedling stage showed that CarHsfA2, A6, and B2 were significantly upregulated in both the stages of crop growth and other four Hsfs (CarHsfA2, A6a, A6c, B2a) showed early transcriptional upregulation for heat stress at seedling stage of chickpea. These subclasses of Hsfs identified in this study can be further evaluated as candidate genes in the characterization of heat stress response in chickpea.

Indexed as

Amino Acid SequenceCicerDroughtsGene DuplicationGenome, PlantHeat-Shock ResponseHeat Shock Transcription FactorsHot TemperaturePhylogenyPlant ProteinsSalinitySequence AlignmentStress, PhysiologicalHeat Shock Transcription FactorsPlant ProteinsABA-responsive elements (ABRE)Digital expressionDNA binding domainDuplication of HsfsHeat stress-inducible gene expressionHeat stress responsive element (HSE)PhylogenyPod development stage

Identifiers

PMID28474118
OpenAlexW2610928630

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.