Evidence map›Paper›PMID 28473876›Full record

ArticleElectronic journal of statistics2016

Joint Estimation of Precision Matrices in Heterogeneous Populations.

Takumi Saegusa, Ali Shojaie

Open access · goldAbstract read
In one paragraph

Article in Electronic journal of statistics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 56 citations in OpenAlex.

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  10. NETWORK DIFFERENTIAL CONNECTIVITY ANALYSIS.The annals of applied statistics · 2022
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  12. Bayesian graphical models for modern biological applications.Statistical methods & applications · 2022
    Review
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  18. Bayesian Joint Spike-and-Slab Graphical Lasso.Proceedings of machine learning research · 2019
    Article
  19. Article
  20. Simultaneous Clustering and Estimation of Heterogeneous Graphical Models.Journal of machine learning research : JMLR · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Takumi SaegusaDepartment of Mathematics, University of Maryland, College Park, MD 20742 USA.
Ali ShojaieDepartment of Biostatistics, University of Washington, Seattle, WA 98195 USA.
University of Maryland, College Park · USUniversity of Washington · US

Funding

Machine Learning Tools for Discovery and Analysis of Active Metabolic PathwaysR01GM114029 · NIGMS · UNIVERSITY OF WASHINGTON · PI SHOJAIE, ALI · 2016 to 2020
$1.7M
Statistical Methods for Network-Based Integrative Analysis of CVD Epigenetic DataK01HL124050 · NHLBI · UNIVERSITY OF WASHINGTON · PI SHOJAIE, ALI · 2016 to 2020
$693k
NHLBI NIH HHS K01 HL124050NIGMS NIH HHS R01 GM114029
6 · The paper itself

Abstract

We introduce a general framework for estimation of inverse covariance, or precision, matrices from heterogeneous populations. The proposed framework uses a Laplacian shrinkage penalty to encourage similarity among estimates from disparate, but related, subpopulations, while allowing for differences among matrices. We propose an efficient alternating direction method of multipliers (ADMM) algorithm for parameter estimation, as well as its extension for faster computation in high dimensions by thresholding the empirical covariance matrix to identify the joint block diagonal structure in the estimated precision matrices. We establish both variable selection and norm consistency of the proposed estimator for distributions with exponential or polynomial tails. Further, to extend the applicability of the method to the settings with unknown populations structure, we propose a Laplacian penalty based on hierarchical clustering, and discuss conditions under which this data-driven choice results in consistent estimation of precision matrices in heterogenous populations. Extensive numerical studies and applications to gene expression data from subtypes of cancer with distinct clinical outcomes indicate the potential advantages of the proposed method over existing approaches.

Indexed as

graphical modelingGraph Laplacianheterogeneous populationshierarchical clusteringhigh-dimensional estimationprecision matrixsparsity

Identifiers

PMID28473876
PMCPMC5412991
OpenAlexW2963489521

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.