Evidence map›Paper›PMID 28473713›Full record

ArticleScientific reports2017

Structure aided design of a Neu5Gc specific lectin.

Christopher J Day, Adrienne W Paton, Melanie A Higgins, Lucy K Shewell, Freda E-C Jen, Benjamin L Schulz, Brock P Herdman, James C Paton, Michael P Jennings

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Cholera toxin as a model ABArchives of toxicology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Christopher J DayInstitute for Glycomics, Griffith University, Gold Coast, QLD 4222, Australia.
Adrienne W PatonResearch Centre for Infectious Diseases, Department of Molecular and Cellular Biology, University of Adelaide, S.A., 5005, Australia.
Melanie A HigginsResearch Centre for Infectious Diseases, Department of Molecular and Cellular Biology, University of Adelaide, S.A., 5005, Australia.
Lucy K ShewellInstitute for Glycomics, Griffith University, Gold Coast, QLD 4222, Australia.
Freda E-C JenInstitute for Glycomics, Griffith University, Gold Coast, QLD 4222, Australia.
Benjamin L SchulzAustralian Infectious Diseases Research Centre, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, Brisbane, QLD 4072, Australia.
Brock P HerdmanResearch Centre for Infectious Diseases, Department of Molecular and Cellular Biology, University of Adelaide, S.A., 5005, Australia.
James C PatonResearch Centre for Infectious Diseases, Department of Molecular and Cellular Biology, University of Adelaide, S.A., 5005, Australia. james.paton@adelaide.edu.au.
Michael P JenningsInstitute for Glycomics, Griffith University, Gold Coast, QLD 4222, Australia. m.jennings@griffith.edu.au.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Subtilase cytotoxin (SubAB) of Escherichia coli is an AB5 class bacterial toxin. The pentameric B subunit (SubB) binds the cellular carbohydrate receptor, α2-3-linked N-glycolylneuraminic acid (Neu5Gc). Neu5Gc is not expressed on normal human cells, but is expressed by cancer cells. Elevated Neu5Gc has been observed in breast, ovarian, prostate, colon and lung cancer. The presence of Neu5Gc is prognostically important, and correlates with invasiveness, metastasis and tumour grade. Neu5Gc binding by SubB suggests that it may have utility as a diagnostic tool for the detection Neu5Gc tumor antigens. Native SubB has 20-fold less binding to N-acetlylneuraminic acid (Neu5Ac); over 30-fold less if the Neu5Gc linkage was changed from α2-3 to α2-6. Using molecular modeling approaches, site directed mutations were made to reduce the α2-3 [Formula: see text] α2-6-linkage preference, while maintaining or enhancing the selectivity of SubB for Neu5Gc over Neu5Ac. Surface plasmon resonance and glycan array analysis showed that the SubBΔS106/ΔT107 mutant displayed improved specificity towards Neu5Gc and bound to α2-6-linked Neu5Gc. SubBΔS106/ΔT107 could discriminate NeuGc- over Neu5Ac-glycoconjugates in ELISA. These data suggest that improved SubB mutants offer a new tool for the testing of biological samples, particularly serum and other fluids from individuals with cancer or suspected of having cancer.

Indexed as

AnimalsBinding SitesCattleEnzyme-Linked Immunosorbent AssayEscherichia coli ProteinsHumansLectinsModels, MolecularMutant ProteinsMutationNeuraminic AcidsProtein EngineeringSubtilisinsSurface Plasmon ResonanceEscherichia coli ProteinsLectinsMutant ProteinsNeuraminic AcidsN-glycolylneuraminic acidsubtilase cytotoxin, E coliSubtilisins

Identifiers

PMID28473713
PMCPMC5431456

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.