Evidence map›Paper›PMID 28473589›Full record

ArticleScience (New York, N.Y.)2017

Negative selection in humans and fruit flies involves synergistic epistasis.

Mashaal Sohail, Olga A Vakhrusheva, Jae Hoon Sul, Sara L Pulit, Laurent C Francioli, Genome of the Netherlands Consortium, Alzheimer’s Disease Neuroimaging Initiative, Leonard H van den Berg, Jan H Veldink, Paul I W de Bakker and 3 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Article
  2. Background selection in recombining genomes and its consequences for the maintenance of variation in complex traits.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The distribution of highly deleterious variants across human ancestry groups.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Article
  10. Review
  11. Linkage equilibrium between rare mutations.bioRxiv : the preprint server for biology · 2024
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Olga A Vakhrusheva
Laurent C Francioli
Genome of the Netherlands Consortium
Alzheimer’s Disease Neuroimaging Initiative
Leonard H van den BergORCID 0000-0002-6559-3965
Jan H Veldink
Paul I W de BakkerORCID 0000-0001-7735-7858
Georgii A BazykinORCID 0000-0003-2334-2751
Alexey S KondrashovORCID 0000-0002-9193-3505

Funding

Statistical methods for studies of rare variantsR01MH101244 · NIMH · HARVARD MEDICAL SCHOOL · PI Benjamin Michael Neale, ALKES L PRICE · 2013 to 2026
$9.4M
Powering whole genome sequence-based genetic discovery for common human diseases- Extended 2021-2022.U01HG009088 · NHGRI · HARVARD SCHOOL OF PUBLIC HEALTH · PI LIN, XIHONG, NEALE, BENJAMIN MICHAEL · 2016 to 2021
$5.1M
New Methods and Enhanced Software for Predicting Functional SNPsR01GM078598 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI SUNYAEV, SHAMIL · 2007 to 2017
$3.5M
Improving Polygenic Prediction using Next-Generation Data SetsR01GM105857 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI SUNYAEV, SHAMIL · 2014 to 2017
$2.0M
NHGRI NIH HHS U01 HG009088NIGMS NIH HHS R01 GM078598NIGMS NIH HHS R01 GM105857NIMH NIH HHS R01 MH101244
6 · The paper itself

Abstract

Negative selection against deleterious alleles produced by mutation influences within-population variation as the most pervasive form of natural selection. However, it is not known whether deleterious alleles affect fitness independently, so that cumulative fitness loss depends exponentially on the number of deleterious alleles, or synergistically, so that each additional deleterious allele results in a larger decrease in relative fitness. Negative selection with synergistic epistasis should produce negative linkage disequilibrium between deleterious alleles and, therefore, an underdispersed distribution of the number of deleterious alleles in the genome. Indeed, we detected underdispersion of the number of rare loss-of-function alleles in eight independent data sets from human and fly populations. Thus, selection against rare protein-disrupting alleles is characterized by synergistic epistasis, which may explain how human and fly populations persist despite high genomic mutation rates.

Indexed as

Epistasis, GeneticGenome, HumanGenome, InsectMutation RateSelection, GeneticAllelesAnimalsDrosophila melanogasterGenetic FitnessHumansLinkage DisequilibriumMutation, Missense

Identifiers

PMID28473589
PMCPMC6200135

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.