Evidence map›Paper›PMID 28472341›Full record

ArticleNucleic acids research2017

In mammalian foetal testes, SOX9 regulates expression of its target genes by binding to genomic regions with conserved signatures.

Massilva Rahmoun, Rowena Lavery, Sabine Laurent-Chaballier, Nicolas Bellora, Gayle K Philip, Moïra Rossitto, Aleisha Symon, Eric Pailhoux, Florence Cammas, Jessica Chung and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 102 citations in OpenAlex.

  1. Review
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  5. Exploration of Novel Markers in Tan Sheep Spermatogenesis.Animals : an open access journal from MDPI · 2026
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  16. A role for TRPC3 in mammalian testis development.Frontiers in cell and developmental biology · 2024
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 4 countries.

Massilva RahmounInstitute of Human Genetics, CNRS-University of Montpellier UMR9002, 34396 Montpellier cedex 5, France.
Rowena LaveryThe Hudson Institute of Medical Research and Department of Anatomy, Monash University, Melbourne, Australia.
Sabine Laurent-ChaballierInstitut de Recherche en Cancérologie de Montpellier, IRCM, INSERM U1194, Université de Montpellier, Institut régional du Cancer de Montpellier, Montpellier F-34298, France.
Nicolas BelloraInstituto Andino Patagónico de Tecnologías Biológicas y Geoambientales (IPATEC), Universidad Nacional del Comahue - CONICET, Bariloche, Argentina.
Gayle K PhilipVLSCI, LAB-14, 700 Swanston Street, Carlton 3053, Victoria, Australia.
Moïra RossittoInstitute of Human Genetics, CNRS-University of Montpellier UMR9002, 34396 Montpellier cedex 5, France.
Aleisha SymonThe Hudson Institute of Medical Research and Department of Anatomy, Monash University, Melbourne, Australia.
Eric PailhouxINRA Biologie du Développement et Reproduction, Domaine de Vilvert, 78352 Jouy-en-Josas Cedex, France.
Florence CammasInstitut de Recherche en Cancérologie de Montpellier, IRCM, INSERM U1194, Université de Montpellier, Institut régional du Cancer de Montpellier, Montpellier F-34298, France.
Jessica ChungVLSCI, LAB-14, 700 Swanston Street, Carlton 3053, Victoria, Australia.
Stefan Bagheri-FamThe Hudson Institute of Medical Research and Department of Anatomy, Monash University, Melbourne, Australia.
Mark MurphyDepartment of Genetics, Cell Biology and Development, University of Minnesota, 6-160 Jackson hall, 321 Church St, SE, Minneapolis, MN 55455, USA.
Vivian BardwellDepartment of Genetics, Cell Biology and Development, University of Minnesota, 6-160 Jackson hall, 321 Church St, SE, Minneapolis, MN 55455, USA.
David ZarkowerDepartment of Genetics, Cell Biology and Development, University of Minnesota, 6-160 Jackson hall, 321 Church St, SE, Minneapolis, MN 55455, USA.
Brigitte Boizet-BonhoureInstitute of Human Genetics, CNRS-University of Montpellier UMR9002, 34396 Montpellier cedex 5, France.
Philippe ClairUniversity of Montpellier, Montpellier GenomiX, bat 24, Place Eugène Bataillon, 34095 Montpellier cedex 5, France.
Vincent R HarleyThe Hudson Institute of Medical Research and Department of Anatomy, Monash University, Melbourne, Australia.
Francis PoulatInstitute of Human Genetics, CNRS-University of Montpellier UMR9002, 34396 Montpellier cedex 5, France.
Hudson Institute of Medical Research · AUInstitut de Génétique Humaine · FRTwin Cities Orthopedics · USMelbourne Bioinformatics · AUCentro Científico Tecnológico - Patagonia Norte · ARInserm · FRLaboratoire de Biologie du Développement · FRMontpellier GenomiX · FRUniversité de Montpellier · FR

Funding

DMRT1 IN MAMMALIAN SEXUAL DEVELOPMENTR01GM059152 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI BARDWELL, VIVIAN J, ZARKOWER, DAVID A. · 1999 to 2019
$8.8M
NIGMS NIH HHS R01 GM059152
6 · The paper itself

Abstract

In mammalian embryonic gonads, SOX9 is required for the determination of Sertoli cells that orchestrate testis morphogenesis. To identify genetic networks directly regulated by SOX9, we combined analysis of SOX9-bound chromatin regions from murine and bovine foetal testes with sequencing of RNA samples from mouse testes lacking Sox9. We found that SOX9 controls a conserved genetic programme that involves most of the sex-determining genes. In foetal testes, SOX9 modulates both transcription and directly or indirectly sex-specific differential splicing of its target genes through binding to genomic regions with sequence motifs that are conserved among mammals and that we called 'Sertoli Cell Signature' (SCS). The SCS is characterized by a precise organization of binding motifs for the Sertoli cell reprogramming factors SOX9, GATA4 and DMRT1. As SOX9 biological role in mammalian gonads is to determine Sertoli cells, we correlated this genomic signature with the presence of SOX9 on chromatin in foetal testes, therefore equating this signature to a genomic bar code of the fate of foetal Sertoli cells. Starting from the hypothesis that nuclear factors that bind to genomic regions with SCS could functionally interact with SOX9, we identified TRIM28 as a new SOX9 partner in foetal testes.

Indexed as

Gene Expression Regulation, DevelopmentalTranscriptomeAnimalsCattleChromatinEmbryo, MammalianFemaleFetusGATA4 Transcription FactorGene Regulatory NetworksMaleMiceMorphogenesisNuclear ProteinsProtein BindingRepressor ProteinsChromatinDMRT1 proteinGATA4 Transcription FactorNuclear ProteinsRepressor ProteinsSOX9 Transcription FactorTranscription FactorsTrim28 protein, mouseTripartite Motif-Containing Protein 28

Identifiers

PMID28472341
PMCPMC5499551
OpenAlexW2611943925

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.