Evidence map›Paper›PMID 28472139›Full record

ArticlePloS one2017

Gene expression profiling in Pekin duck embryonic breast muscle.

Tie-Shan Xu, Li-Hong Gu, Wei Huang, Wan-Liang Xia, Yun-Sheng Zhang, Ya-Ge Zhang, Guang Rong, Kyle Schachtschneider, Shui-Sheng Hou

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tie-Shan XuTropical Crop Genetic Resource Research Institute, Chinese Academy of Tropical Agricultural Sciences, Danzhou, Hainan, P.R. China.
Li-Hong GuInstitute of Animal Science & Veterinary, Hainan Academy of Agricultural Science, Haikou, P.R. China.
Wei HuangInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, P.R. China.
Wan-Liang XiaTropical Crop Genetic Resource Research Institute, Chinese Academy of Tropical Agricultural Sciences, Danzhou, Hainan, P.R. China.
Yun-Sheng ZhangInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, P.R. China.
Ya-Ge ZhangTropical Crop Genetic Resource Research Institute, Chinese Academy of Tropical Agricultural Sciences, Danzhou, Hainan, P.R. China.
Guang RongTropical Crop Genetic Resource Research Institute, Chinese Academy of Tropical Agricultural Sciences, Danzhou, Hainan, P.R. China.
Kyle SchachtschneiderDepartment of Radiology, University of Illinois at Chicago, Chicago, Illinois, United States of America.
Shui-Sheng HouInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, P.R. China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lean-type Pekin duck is a breed gained through long-term selection and great effort has been exerted to understand the mechanisms underlying increased muscle yields. However, the genes involved in Pekin duck embryonic breast muscle development have not been explored to date. In this study, we investigated gene expression profiles in Pekin Duck embryonic breast muscle at hatched day 13 (E13), E19, and E27 using RNA-seq. In total, we produced 519,312,178 raw reads resulting in 497,348,158 high-quality reads after filtering. The mapping, distribution of reads along annotated genes, and consistency across replicates demonstrates the high quality of the RNA-seq data used in this study, allowing us to continue with the downstream analysis. Significantly fewer differentially expressed genes (DEGs) were identified between E13 and E19 (203 DEGs) compared to E27 and E19 (2,797 DEGs). Many DEGs highly expressed in E19 are involved in metabolic processes and cell division. KEGG analysis showed many pathways associated with fat development were significantly enriched for DEGs highly expressed in E27. These results provide a basis for the further investigation of the mechanisms involved in Pekin duck embryonic breast muscle development.

Indexed as

Gene Expression ProfilingAnimalsDucksMuscle, SkeletalSequence Analysis, RNA

Identifiers

PMID28472139
PMCPMC5417483

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.