Evidence map›Paper›PMID 28471438›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2017

Electronic health record phenotype in subjects with genetic variants associated with arrhythmogenic right ventricular cardiomyopathy: a study of 30,716 subjects with exome sequencing.

Christopher M Haggerty, Cynthia A James, Hugh Calkins, Crystal Tichnell, Joseph B Leader, Dustin N Hartzel, Christopher D Nevius, Sarah A Pendergrass, Thomas N Person, Marci Schwartz and 18 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Role of non-coding variants in cardiovascular disease.Journal of cellular and molecular medicine · 2023
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Genetic Counseling, Personalized Medicine, and Precision Health.Cold Spring Harbor perspectives in medicine · 2020
    Review
  12. Management of Secondary Genomic Findings.American journal of human genetics · 2020
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. A gene-centric strategy for identifying disease-causing rare variants in dilated cardiomyopathy.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  18. Article
  19. Diagnostic and therapeutic strategies for arrhythmogenic right ventricular dysplasia/cardiomyopathy patient.Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 6 institutions in 1 country.

Christopher M HaggertyDepartment of Imaging Science and Innovation, Geisinger Health System, Danville, Pennsylvania, USA.
Cynthia A JamesDivision of Cardiology, Department of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Hugh CalkinsDivision of Cardiology, Department of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Crystal TichnellDivision of Cardiology, Department of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Joseph B LeaderBiomedical and Translational Informatics Institute, Geisinger Health System, Danville, Pennsylvania, USA.
Dustin N HartzelBiomedical and Translational Informatics Institute, Geisinger Health System, Danville, Pennsylvania, USA.
Christopher D NeviusDepartment of Imaging Science and Innovation, Geisinger Health System, Danville, Pennsylvania, USA.
Sarah A PendergrassBiomedical and Translational Informatics Institute, Geisinger Health System, Danville, Pennsylvania, USA.
Thomas N PersonBiomedical and Translational Informatics Institute, Geisinger Health System, Danville, Pennsylvania, USA.
Marci SchwartzGenomic Medicine Institute, Geisinger Health System, Danville, Pennsylvania, USA.
Marylyn D RitchieBiomedical and Translational Informatics Institute, Geisinger Health System, Danville, Pennsylvania, USA.
David J CareyWeis Center for Health Research, Geisinger Health System, Danville, Pennsylvania, USA.
David H LedbetterGenomic Medicine Institute, Geisinger Health System, Danville, Pennsylvania, USA.
Marc S WilliamsGenomic Medicine Institute, Geisinger Health System, Danville, Pennsylvania, USA.
Frederick E DeweyRegeneron Genetics Center, Regeneron Pharmaceuticals, Tarrytown, New York, USA.
Alexander LopezRegeneron Genetics Center, Regeneron Pharmaceuticals, Tarrytown, New York, USA.
John PennRegeneron Genetics Center, Regeneron Pharmaceuticals, Tarrytown, New York, USA.
John D OvertonRegeneron Genetics Center, Regeneron Pharmaceuticals, Tarrytown, New York, USA.
Jeffrey G ReidRegeneron Genetics Center, Regeneron Pharmaceuticals, Tarrytown, New York, USA.
Matthew LeboLaboratory for Molecular Medicine, Partners HealthCare Personalized Medicine, Cambridge, Massachusetts, USA.
Heather Mason-SuaresLaboratory for Molecular Medicine, Partners HealthCare Personalized Medicine, Cambridge, Massachusetts, USA.
Christina Austin-TseLaboratory for Molecular Medicine, Partners HealthCare Personalized Medicine, Cambridge, Massachusetts, USA.
Heidi L RehmLaboratory for Molecular Medicine, Partners HealthCare Personalized Medicine, Cambridge, Massachusetts, USA.
Brian P DelisleDepartment of Physiology, University of Kentucky, Lexington, Kentucky, USA.
Daniel J MakowskiDivision of Cardiology, Geisinger Health System, Danville, Pennsylvania, USA.
Vishal C MehraDivision of Cardiology, Geisinger Health System, Danville, Pennsylvania, USA.
Michael F MurrayGenomic Medicine Institute, Geisinger Health System, Danville, Pennsylvania, USA.
Brandon K FornwaltDepartment of Imaging Science and Innovation, Geisinger Health System, Danville, Pennsylvania, USA.
Geisinger Health System · USRegeneron (United States) · USBrigham and Women's Hospital · USJohns Hopkins University · USMass General Brigham · USUniversity of Kentucky · US

Funding

OMOP information model for eMERGE phenotypingU01HG008679 · NHGRI · GEISINGER CLINIC · PI WILLIAMS, MARC S. · 2015 to 2019
$4.4M
Exploring the Role of Dyssynchrony in Pediatric Heart Disease with MRIDP5OD012132 · OD · UNIVERSITY OF KENTUCKY · PI FORNWALT, BRANDON K · 2012 to 2016
$2.2M
Aortic Wall Distensibility in the Growth and Rupture of Abdominal Aortic AneurysmF32HL123215 · NHLBI · UNIVERSITY OF KENTUCKY · PI HAGGERTY, CHRISTOPHER M · 2014 to 2014
$52k
NHGRI NIH HHS U01 HG008679NHLBI NIH HHS F32 HL123215NIH HHS DP5 OD012132
6 · The paper itself

Abstract

PurposeArrhythmogenic right ventricular cardiomyopathy (ARVC) is an inherited heart disease. Clinical follow-up of incidental findings in ARVC-associated genes is recommended. We aimed to determine the prevalence of disease thus ascertained.MethodsIndividuals (n = 30,716) underwent exome sequencing. Variants in PKP2, DSG2, DSC2, DSP, JUP, TMEM43, or TGFβ3 that were database-listed as pathogenic or likely pathogenic were identified and evidence-reviewed. For subjects with putative loss-of-function (pLOF) variants or variants of uncertain significance (VUS), electronic health records (EHR) were reviewed for ARVC diagnosis, diagnostic criteria, and International Classification of Diseases (ICD-9) codes.ResultsEighteen subjects had pLOF variants; none of these had an EHR diagnosis of ARVC. Of 14 patients with an electrocardiogram, one had a minor diagnostic criterion; the rest were normal. A total of 184 subjects had VUS, none of whom had an ARVC diagnosis. The proportion of subjects with VUS with major (4%) or minor (13%) electrocardiogram diagnostic criteria did not differ from that of variant-negative controls. ICD-9 codes showed no difference in defibrillator use, electrophysiologic abnormalities or nonischemic cardiomyopathies in patients with pLOF or VUSs compared with controls.ConclusionpLOF variants in an unselected cohort were not associated with ARVC phenotypes based on EHR review. The negative predictive value of EHR review remains uncertain.

Indexed as

ExomeGenetic VariationSequence Analysis, DNAAdultArrhythmogenic Right Ventricular DysplasiaCohort StudiesElectronic Health RecordsFemaleGenetic Association StudiesGenotypeHumansMaleMiddle AgedPhenotypePrevalence

Identifiers

PMID28471438
PMCPMC5671380
OpenAlexW2610801800

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.