Evidence map›Paper›PMID 28471404›Full record

ArticleBiomolecules2017

TrmL and TusA Are Necessary for rpoS and MiaA Is Required for hfq Expression in Escherichia coli.

Joseph I Aubee, Morenike Olu, Karl M Thompson

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Compendium of RNA modifications for bacterial stress adaptation.Microbiology and molecular biology reviews : MMBR · 2026
    Review
  2. Antimicrobial agents and chemotherapy · 2026
    Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. RpoS and the bacterial general stress response.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  8. tRNA epitranscriptome determines pathogenicity of the opportunistic pathogenProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Joseph I AubeeDepartment of Microbiology, College of Medicine, Howard University, Washington, DC 20059, USA. joseph.aubee@howard.edu.
Morenike OluDepartment of Microbiology, College of Medicine, Howard University, Washington, DC 20059, USA. morenike.olu@bison.howard.edu.
Karl M ThompsonDepartment of Microbiology, College of Medicine, Howard University, Washington, DC 20059, USA. karl.thompson@howard.edu.
Howard University · US

Funding

PROTEOMICS CORE FACILITYG12MD007597 · NIMHD · HOWARD UNIVERSITY · PI SOUTHERLAND, WILLIAM M. · 2012 to 2018
$14.8M
NsrR regulation of the small noncoding RNA RybB in Escherichia coliSC2GM105419 · NIGMS · HOWARD UNIVERSITY · PI THOMPSON, KARL M · 2013 to 2015
$452k
NIGMS NIH HHS SC2 GM105419NIMHD NIH HHS G12 MD007597
6 · The paper itself

Abstract

Previous work demonstrated that efficient RNA Polymerase sigma S-subunit (RpoS) translation requires the N6-isopentenyladenosine i6A37 transfer RNA (tRNA) modification for UUX-Leu decoding. Here we investigate the effect of two additional tRNA modification systems on RpoS translation; the analysis was also extended to another High UUX-leucine codon (HULC) protein, Host Factor for phage Qβ (Hfq). One tRNA modification, the addition of the 2'-O-methylcytidine/uridine 34 (C/U34m) tRNA modification by tRNA (cytidine/uridine-2'O)-ribose methyltransferase L (TrmL), requires the presence of the

Indexed as

Gene Expression Regulation, BacterialAlkyl and Aryl TransferasesBacterial ProteinsBase SequenceEscherichia coliEscherichia coli ProteinsHost Factor 1 ProteinMethyltransferasesRNA, TransferSigma Factoradenylate isopentenyltransferaseAlkyl and Aryl TransferasesBacterial ProteinsEscherichia coli ProteinsHfq protein, E coliHost Factor 1 ProteinMethyltransferasesRNA, TransferSigma Factorsigma factor KatF protein, BacteriaTrmL protein, E coliTusA protein, E colicodon biasC/U34m tRNA modificationHfqi6A37 tRNA modificationleucineMiaARpoSs2U34 tRNA modificationTrmLTusA

Identifiers

PMID28471404
PMCPMC5485728
OpenAlexW2611792881

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.