Evidence map›Paper›PMID 28471013›Full record

ArticleAngewandte Chemie (International ed. in English)2017

Oligonucleotide-Addressed Covalent 3'-Terminal Derivatization of Small RNA Strands for Enrichment and Visualization.

Aleksandr Osipenko, Alexandra Plotnikova, Milda Nainytė, Viktoras Masevičius, Saulius Klimašauskas, Giedrius Vilkaitis

Abstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Strategies for Covalent Labeling of Long RNAs.Chembiochem : a European journal of chemical biology · 2021
    Review
  6. Article
  7. Review
  8. Tag-Free Internal RNA Labeling and Photocaging Based on mRNA Methyltransferases.Angewandte Chemie (International ed. in English) · 2021
    Article
  9. Covalent labeling of nucleic acids.Chemical Society reviews · 2020
    Review
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Aleksandr OsipenkoInstitute of Biotechnology, Vilnius University, 10257, Vilnius, Lithuania.
Alexandra PlotnikovaInstitute of Biotechnology, Vilnius University, 10257, Vilnius, Lithuania.
Milda NainytėInstitute of Biotechnology, Vilnius University, 10257, Vilnius, Lithuania.
Viktoras MasevičiusInstitute of Biotechnology, Vilnius University, 10257, Vilnius, Lithuania.
Saulius KlimašauskasInstitute of Biotechnology, Vilnius University, 10257, Vilnius, Lithuania.
Giedrius VilkaitisInstitute of Biotechnology, Vilnius University, 10257, Vilnius, Lithuania.
Vilnius University · LT

Funding

Direct single nucleotide mapping of genomic CpG marksR21HG007200 · NHGRI · VILNIAUS UNIVERSITETAS · PI KLIMASAUSKAS, SAULIUS · 2013 to 2014
$296k
NHGRI NIH HHS R21 HG007200
6 · The paper itself

Abstract

The HEN1 RNA 2'-O-methyltransferase plays important roles in the biogenesis of small non-coding RNAs in plants and proved a valuable tool for selective transfer of functional groups from cofactor analogues onto miRNA and siRNA duplexes in vitro. Herein, we demonstrate the versatile HEN1-mediated methylation and alkylation of small RNA strands in heteroduplexes with a range of complementary synthetic DNA oligonucleotides carrying user-defined moieties such as internal or 3'-terminal extensions or chemical reporter groups. The observed DNA-guided covalent functionalization of RNA broadens our understanding of the substrate specificity of HEN1 and paves the way for the development of novel chemo-enzymatic tools with potential applications in miRNomics, synthetic biology, and nanomedicine.

Indexed as

AlkylationMethylationMethyltransferasesMicroRNAsNucleic Acid HeteroduplexesOligonucleotidesRNA, Small InterferingRNA, Small UntranslatedSubstrate SpecificityMethyltransferasesMicroRNAsNucleic Acid HeteroduplexesOligonucleotidesRNA 2'-O-methyltransferaseRNA, Small InterferingRNA, Small UntranslatedHEN1methyltransferasesmicroRNAsiRNAsynthetic AdoMet analogues

Identifiers

PMID28471013
PMCPMC5554592
OpenAlexW2610794034

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.