Evidence map›Paper›PMID 28470883›Full record

ArticleChembiochem : a European journal of chemical biology2017

Selective Covalent Protein Modification by 4-Halopyridines through Catalysis.

Christopher L Schardon, Alfred Tuley, Joyce A V Er, Jake C Swartzel, Walter Fast

Open access · greenAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Proximity-Dependent Labeling of Cysteines.Journal of the American Chemical Society · 2021
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Christopher L SchardonBiochemistry Graduate Program, The University of Texas, Austin, TX, 78712, USA.ORCID 0000-0003-4563-0025
Alfred TuleyDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, The University of Texas, Austin, TX, 78712, USA.
Joyce A V ErDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, The University of Texas, Austin, TX, 78712, USA.
Jake C SwartzelDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, The University of Texas, Austin, TX, 78712, USA.
Walter FastDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, The University of Texas, Austin, TX, 78712, USA.ORCID 0000-0001-7567-2213
Austin College · USThe University of Texas at Austin · US

Funding

IRACDA Postdoctoral Program: Collaborative Opportunities for Research EducatorsK12GM102745 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BRODBELT, JENNIFER S. · 2013 to 2017
$2.2M
Enzymology of DimethylargininaseR01GM069754 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI FAST, WALTER L · 2008 to 2012
$1.9M
NIGMS NIH HHS K12 GM102745NIGMS NIH HHS R01 GM069754
6 · The paper itself

Abstract

We have investigated 4-halopyridines as selective, tunable, and switchable covalent protein modifiers for use in the development of chemical probes. Nonenzymatic reactivity of 4-chloropyridine with amino acids and thiols was ranked with respect to common covalent protein-modifying reagents and found to have reactivity similar to that of acrylamide, but could be switched to a reactivity similar to that of iodoacetamide upon stabilization of the positively charged pyridinium. Diverse, fragment-sized 4-halopyridines inactivated human dimethylarginine dimethylaminohydrolase-1 (DDAH1) through covalent modification of the active site cysteine, acting as quiescent affinity labels that required off-pathway catalysis through stabilization of the protonated pyridinium by a neighboring aspartate residue. A series of 2-fluoromethyl-substituted 4-chloropyridines demonstrated that the pK

Indexed as

AcrylamideAffinity LabelsAmidohydrolasesCysteineEscherichia coliGlutathioneHumansIodoacetamidePhenolsProteomePyridinesPyridinium CompoundsSulfhydryl CompoundsAcrylamideAffinity LabelsAmidohydrolasesCysteinedimethylargininaseGlutathioneIodoacetamidePhenolsProteomePyridinesPyridinium CompoundsSulfhydryl Compoundsthiophenolcovalent inhibitorscovalent probesenzyme inactivationhalopyridines

Identifiers

PMID28470883
PMCPMC5886304
OpenAlexW2611351260

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.