Evidence map›Paper›PMID 28469420›Full record

ArticleBioinformatics and biology insights2017

In Silico Approach for Characterization and Comparison of Repeats in the Genomes of Oil and Date Palms.

Jaire Alves Ferreira Filho, Lucas Soares de Brito, André Pereira Leão, Alexandre Alonso Alves, Eduardo Fernandes Formighieri, Manoel Teixeira Souza Júnior

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Bioinformatics and biology insights, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jaire Alves Ferreira FilhoGraduate Program in Plant Biotechnology, Federal University of Lavras (UFLA), Lavras, Brazil.
Lucas Soares de BritoEmbrapa Agroenergia, Parque Estação Biológica (PqEB), Brasília, Brazil.
André Pereira LeãoEmbrapa Agroenergia, Parque Estação Biológica (PqEB), Brasília, Brazil.
Alexandre Alonso AlvesEmbrapa Agroenergia, Parque Estação Biológica (PqEB), Brasília, Brazil.
Eduardo Fernandes FormighieriEmbrapa Agroenergia, Parque Estação Biológica (PqEB), Brasília, Brazil.
Manoel Teixeira Souza JúniorGraduate Program in Plant Biotechnology, Federal University of Lavras (UFLA), Lavras, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposable elements (TEs) are mobile genetic elements present in almost all eukaryotic genomes. Due to their typical patterns of repetition, discovery, and characterization, they demand analysis by various bioinformatics software. Probably, as a result of the need for a complex analysis, many genomes publicly available do not have these elements annotated yet. In this study, a de novo and homology-based identification of TEs and microsatellites was performed using genomic data from 3 palm species:

Indexed as

bioinformaticsElaeis guineensisElaeis oleiferaPhoenix dactyliferatransposable elements

Identifiers

PMID28469420
PMCPMC5402704

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.