Evidence map›Paper›PMID 28468875›Full record

ArticleJournal of virology2017

Immune Escape Variants of H9N2 Influenza Viruses Containing Deletions at the Hemagglutinin Receptor Binding Site Retain Fitness

Thomas P Peacock, Donald J Benton, Joe James, Jean-Remy Sadeyen, Pengxiang Chang, Joshua E Sealy, Juliet E Bryant, Stephen R Martin, Holly Shelton, Wendy S Barclay and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

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  20. H9 Influenza Viruses: An Emerging Challenge.Cold Spring Harbor perspectives in medicine · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Thomas P PeacockThe Pirbright Institute, Pirbright, Woking, United Kingdom.
Donald J BentonThe Francis Crick Institute, London, United Kingdom.
Joe JamesThe Pirbright Institute, Pirbright, Woking, United Kingdom.
Jean-Remy SadeyenThe Pirbright Institute, Pirbright, Woking, United Kingdom.
Pengxiang ChangThe Pirbright Institute, Pirbright, Woking, United Kingdom.
Joshua E SealyThe Pirbright Institute, Pirbright, Woking, United Kingdom.
Juliet E BryantOxford University Clinical Research Unit and Wellcome Trust Major Overseas Programme, National Hospital of Tropical Diseases, Hanoi, Vietnam.
Stephen R MartinThe Francis Crick Institute, London, United Kingdom.
Holly SheltonThe Pirbright Institute, Pirbright, Woking, United Kingdom.ORCID http://orcid.org/0000-0002-5776-0735
Wendy S BarclayDepartment of Virology, Imperial College London, London, United Kingdom.
Munir IqbalThe Pirbright Institute, Pirbright, Woking, United Kingdom munir.iqbal@pirbright.ac.uk.
The Pirbright Institute · GBThe Francis Crick Institute · GBImperial College London · GBOxford University Clinical Research Unit · VNUniversity of London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/K002465/1Biotechnology and Biological Sciences Research Council BB/L018853/1Biotechnology and Biological Sciences Research Council BBS/E/00001759Biotechnology and Biological Sciences Research Council BBS/E/I/00001708Biotechnology and Biological Sciences Research Council BBS/E/I/00007031Biotechnology and Biological Sciences Research Council BBS/E/I/00007034Biotechnology and Biological Sciences Research Council BBS/E/I/00007038Biotechnology and Biological Sciences Research Council BBS/E/I/00007039Medical Research Council U117512723Medical Research Council U117570592Medical Research Council U117585868
6 · The paper itself

Abstract

H9N2 avian influenza viruses are enzootic in poultry across Asia and North Africa, where they pose a threat to human health as both zoonotic agents and potential pandemic candidates. Poultry vaccination against H9N2 viruses has been employed in many regions; however, vaccine effectiveness is frequently compromised due to antigenic drift arising from amino acid substitutions in the major influenza virus antigen hemagglutinin (HA). Using selection with HA-specific monoclonal antibodies, we previously identified H9N2 antibody escape mutants that contained deletions of amino acids in the 220 loop of the HA receptor binding sites (RBSs). Here we analyzed the impact of these deletions on virus zoonotic infection characteristics and fitness. We demonstrated that mutant viruses with RBS deletions are able to escape polyclonal antiserum binding and are able to infect and be transmitted between chickens. We showed that the deletion mutants have increased binding to human-like receptors and greater replication in primary human airway cells; however, the mutant HAs also displayed reduced pH and thermal stability. In summary, we infer that variant influenza viruses with deletions in the 220 loop could arise in the field due to immune selection pressure; however, due to reduced HA stability, we conclude that these viruses are unlikely to be transmitted from human to human by the airborne route, a prerequisite for pandemic emergence. Our findings underscore the complex interplay between antigenic drift and viral fitness for avian influenza viruses as well as the challenges of predicting which viral variants may pose the greatest threats for zoonotic and pandemic emergence.

Indexed as

Immune EvasionMutationVirus ReplicationAnimalsBinding SitesCells, CulturedChickensHemagglutinin Glycoproteins, Influenza VirusHumansInfluenza A Virus, H9N2 SubtypeInfluenza in BirdsSequence DeletionVirulenceVirus AttachmentHemagglutinin Glycoproteins, Influenza Virusantigenic driftavian influenza virusH9N2hemagglutininpandemicreceptor binding sitezoonotic

Identifiers

PMID28468875
PMCPMC5487547
OpenAlexW2611536520

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.