Evidence map›Paper›PMID 28468852›Full record

ArticleJournal of clinical microbiology2017

A Simple Phosphate-Buffered-Saline-Based Extraction Method Improves Specificity of HIV Viral Load Monitoring Using Dried Blood Spots.

A Tariro Makadzange, F Kathryn Boyd, Benjamin Chimukangara, Collen Masimirembwa, David Katzenstein, Chiratidzo E Ndhlovu

Open access · hybridAbstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 2 pooled it
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 2 syntheses or guidelines pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Nucleic acid amplification testing using dried blood spots to confirm the diagnosis of HIV-1 in adults.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

A Tariro MakadzangeRagon Institute of MGH, MIT and Harvard, Cambridge, Massachussetts, USA.
F Kathryn BoydDepartment of Medicine, University of Zimbabwe College of Health Sciences, Harare, Zimbabwe.
Benjamin ChimukangaraDepartment of Virology, National Health Laboratory Service, University of KwaZulu-Natal, Durban, South Africa.
Collen MasimirembwaAfrican Institute for Biomedical Sciences and Technology, Harare, Zimbabwe.
David KatzensteinDivision of Infectious Diseases, Stanford University, Palo Alto, California, USA davidkk@stanford.edu.
Chiratidzo E NdhlovuDepartment of Medicine, University of Zimbabwe College of Health Sciences, Harare, Zimbabwe.
University of Zimbabwe · ZWAfrican Institute of Biomedical Science and Technology · ZWNational Health Laboratory Service · ZAStanford University · US

Funding

Determinants of Immune Control in HIV perinatally infected children in sub-SaharaK08AI104348 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI MAKADZANGE, AZURE TARIRO · 2013 to 2016
$745k
CGH CDC HHS U01 GH000737NIAID NIH HHS K08 AI104348
6 · The paper itself

Abstract

Although Roche COBAS Ampliprep/COBAS TaqMan (CAP/CTM) systems are widely used in sub-Saharan Africa for early infant diagnosis of HIV from dried blood spots (DBS), viral load monitoring with this system is not practical due to nonspecific extraction of both cell-free and cell-associated viral nucleic acids. A simplified DBS extraction technique for cell-free virus elution using phosphate-buffered saline (PBS) may provide an alternative analyte for lower-cost quantitative HIV virus load (VL) testing to monitor antiretroviral therapy (ART). We evaluated the CAP/CTM v2.0 assay in 272 paired plasma and DBS specimens using the cell-free virus elution method and determined the level of agreement, sensitivity, and specificity at thresholds of target not detected (TND), target below the limit of quantification (BLQ) (<20 copies/ml in plasma or <400 copies/ml in DBS), and VL of <1,000 copies/ml, and VL of <5,000 copies/ml. Reported plasma VL ranged from TND, or <20, to 5,781,592 copies/ml, and DBS VL ranged from TND, or <400, to 467,600 copies/ml. At <1000 copies/ml, agreement between DBS and plasma was 96.7% (kappa coefficient, 0.93;

Indexed as

AdolescentAdultAfrica South of the SaharaAgedAged, 80 and overBloodBuffersChildChild, PreschoolDesiccationFemaleHIV InfectionsHumansInfantInfant, NewbornMaleBufferscell-free virus elutionDBSdried blood spotsdried blood spots (DBS)HIVsub-Saharan Africaviral load monitoringviral load quantification

Identifiers

PMID28468852
PMCPMC5483919
OpenAlexW2610629952

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.