Evidence map›Paper›PMID 28467421›Full record

ArticlePLoS genetics2017

A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism.

Yi Xiong, Vincent W Wu, Andrea Lubbe, Lina Qin, Siwen Deng, Megan Kennedy, Diane Bauer, Vasanth R Singan, Kerrie Barry, Trent R Northen and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 85 citations in OpenAlex.

  1. Metabolic Responses ofMolecules (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Regulation of nutrient utilization in filamentous fungi.Applied microbiology and biotechnology · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Deletion of theJournal of fungi (Basel, Switzerland) · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. The F-box protein geneProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Yi XiongThe Department of Plant and Microbial Biology, The University of California, Berkeley, California, United States of America.
Vincent W WuThe Department of Plant and Microbial Biology, The University of California, Berkeley, California, United States of America.
Andrea LubbeEnvironmental Genomics and System Biology/Biosciences Area Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.
Lina QinThe Department of Plant and Microbial Biology, The University of California, Berkeley, California, United States of America.
Siwen DengThe Department of Plant and Microbial Biology, The University of California, Berkeley, California, United States of America.ORCID http://orcid.org/0000-0002-5309-5870
Megan KennedyU.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America.
Diane BauerU.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America.
Vasanth R SinganU.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America.ORCID http://orcid.org/0000-0002-9983-5707
Kerrie BarryU.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America.
Trent R NorthenEnvironmental Genomics and System Biology/Biosciences Area Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.
Igor V GrigorievThe Department of Plant and Microbial Biology, The University of California, Berkeley, California, United States of America.
N Louise GlassThe Department of Plant and Microbial Biology, The University of California, Berkeley, California, United States of America.ORCID http://orcid.org/0000-0002-4844-2890
Joint Genome Institute · USLawrence Berkeley National Laboratory · USEnergy Biosciences Institute · USUniversity of California, Berkeley · US

Funding

Genome Sequencer FLXS10RR029668 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI NGAI, JOHN J. · 2010 to 2010
$623k
Illumina Sequencer to Facilitate Functional Genomics at BerkeleyS10RR027303 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI TAYLOR, JOHN W. · 2010 to 2010
$500k
NCRR NIH HHS S10 RR027303NCRR NIH HHS S10 RR029668
6 · The paper itself

Abstract

In Neurospora crassa, the transcription factor COL-26 functions as a regulator of glucose signaling and metabolism. Its loss leads to resistance to carbon catabolite repression. Here, we report that COL-26 is necessary for the expression of amylolytic genes in N. crassa and is required for the utilization of maltose and starch. Additionally, the Δcol-26 mutant shows growth defects on preferred carbon sources, such as glucose, an effect that was alleviated if glutamine replaced ammonium as the primary nitrogen source. This rescue did not occur when maltose was used as a sole carbon source. Transcriptome and metabolic analyses of the Δcol-26 mutant relative to its wild type parental strain revealed that amino acid and nitrogen metabolism, the TCA cycle and GABA shunt were adversely affected. Phylogenetic analysis showed a single col-26 homolog in Sordariales, Ophilostomatales, and the Magnaporthales, but an expanded number of col-26 homologs in other filamentous fungal species. Deletion of the closest homolog of col-26 in Trichoderma reesei, bglR, resulted in a mutant with similar preferred carbon source growth deficiency, and which was alleviated if glutamine was the sole nitrogen source, suggesting conservation of COL-26 and BglR function. Our finding provides novel insight into the role of COL-26 for utilization of starch and in integrating carbon and nitrogen metabolism for balanced metabolic activities for optimal carbon and nitrogen distribution.

Indexed as

CarbonFungal ProteinsNeurospora crassaNitrogenStarchTranscription FactorsTranscriptomeCarbonFungal ProteinsNitrogenStarchTranscription Factors

Identifiers

PMID28467421
PMCPMC5435353
OpenAlexW2610179691

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.