Evidence map›Paper›PMID 28466841›Full record

ArticleNature communications2017

Arabidopsis proteins with a transposon-related domain act in gene silencing.

Yoko Ikeda, Thierry Pélissier, Pierre Bourguet, Claude Becker, Marie-Noëlle Pouch-Pélissier, Romain Pogorelcnik, Magdalena Weingartner, Detlef Weigel, Jean-Marc Deragon, Olivier Mathieu

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Phased secondary small interfering RNAs inNAR genomics and bioinformatics · 2023
    Article
  6. Article
  7. Article
  8. Article
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  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. The Plant cell · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yoko IkedaUniversité Clermont Auvergne, CNRS, Inserm, GReD, Clermont-Ferrand F-63000, France.
Thierry PélissierUniversité Clermont Auvergne, CNRS, Inserm, GReD, Clermont-Ferrand F-63000, France.
Pierre BourguetUniversité Clermont Auvergne, CNRS, Inserm, GReD, Clermont-Ferrand F-63000, France.ORCID 0000-0001-8930-1528
Claude BeckerDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen D-72076, Germany.
Marie-Noëlle Pouch-PélissierUniversité Clermont Auvergne, CNRS, Inserm, GReD, Clermont-Ferrand F-63000, France.
Romain PogorelcnikUniversité Clermont Auvergne, CNRS, Inserm, GReD, Clermont-Ferrand F-63000, France.
Magdalena WeingartnerMolekulare Pflanzenphysiologie, Biozentrum Klein Flottbek, Universität Hamburg, Hamburg D-22609, Germany.
Detlef WeigelDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen D-72076, Germany.
Jean-Marc DeragonLaboratoire Génome et Développement des Plantes (LGDP), CNRS, UMR5096, Université de Perpignan Via Domitia, 58 Avenue Paul Alduy, Perpignan Cedex 66860, France.
Olivier MathieuUniversité Clermont Auvergne, CNRS, Inserm, GReD, Clermont-Ferrand F-63000, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposable elements (TEs) are prevalent in most eukaryotes, and host genomes have devised silencing strategies to rein in TE activity. One of these, transcriptional silencing, is generally associated with DNA methylation and short interfering RNAs. Here we show that the Arabidopsis genes MAIL1 and MAIN define an alternative silencing pathway independent of DNA methylation and short interfering RNAs. Mutants for MAIL1 or MAIN exhibit release of silencing and appear to show impaired condensation of pericentromeric heterochromatin. Phylogenetic analysis suggests not only that MAIL1 and MAIN encode a retrotransposon-related plant mobile domain, but also that host plant mobile domains were captured by DNA transposons during plant evolution. Our results reveal a role for Arabidopsis proteins with a transposon-related domain in gene silencing.

Indexed as

Gene SilencingProtein DomainsArabidopsisArabidopsis ProteinsCentromereDNA MethylationDNA Transposable ElementsEvolution, MolecularHeterochromatinNuclear ProteinsRetroelementsRNA, Small InterferingArabidopsis ProteinsDNA Transposable ElementsHeterochromatinMAIL1 protein, ArabidopsisMAIN protein, ArabidopsisNuclear ProteinsRetroelementsRNA, Small Interfering

Identifiers

PMID28466841
PMCPMC5418596

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.