Evidence map›Paper›PMID 28466109›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2017

Fine mapping identifies CsGCN5 encoding a histone acetyltransferase as putative candidate gene for tendril-less1 mutation (td-1) in cucumber.

Feifan Chen, Bingbing Fu, Yupeng Pan, Chaowen Zhang, Haifan Wen, Yiqun Weng, Peng Chen, Yuhong Li

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
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  4. A mutation in CsGME encoding GDP-mannose 3,5-epimerase results in little and wrinkled leaf in cucumber.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  5. Article
  6. Article
  7. Identification of a major QTL,Frontiers in plant science · 2022
    Article
  8. Article
  9. CsUFO is involved in the formation of flowers and tendrils in cucumber.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Review
  10. Review
  11. Article
  12. Genome-based breeding approaches in major vegetable crops.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  13. Review
  14. Article
  15. Review
  16. Breeding science · 2018
    Article
  17. Mutations in CsPID encoding a Ser/Thr protein kinase are responsible for round leaf shape in cucumber (Cucumis sativus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Feifan ChenCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Bingbing FuCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Yupeng PanCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Chaowen ZhangCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Haifan WenCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Yiqun WengHorticulture Department, University of Wisconsin, Madison, WI, 53706, USA.
Peng ChenCollege of Life Science, Northwest A&F University, Yangling, 712100, Shaanxi, China. pengchen@nwsuaf.edu.cn.
Yuhong LiCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China. liyuhong73@nwsuaf.edu.cn.
Northwest A&F University · CNU.S. Vegetable Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageNext-generation sequencing-aided map-based cloning delimited the cucumber tendril - less1 ( td - 1 ) locus into a 190.7-kb region in chromosome 6 harboring a putative, novel-function candidate gene encoding a histone acetyltransferase ( CsGCN5 ). The tendril initiated from the lateral meristem is an important and characteristic organ for the species in the Cucurbitaceae family including cucumber (Cucumis sativus L.). While the tendril has its evolutionary significance, it also poses a nuisance in cucumber cultivation under protected environments in which tendril-less cucumber has its advantages. From an EMS mutagenesis population, we identified a tendril-less mutant B007, which was controlled by a recessive gene td-1. Through next-generation sequencing-aided map-based cloning, we show CsGCN5 (Cucumis sativus GENERAL CONTROL NONDEREPRESSIBLE 5), a cucumber gene for a histone acetyltransferase as the most possible candidate for td-1. A non-synonymous SNP in the first exon of CsGCN5 resulted in an amino-acid substitution from Asp (D) in the wild type to Asn (N) in the tendril-less mutant. The candidacy of CsGCN5 was further confirmed by multiple lines of evidence in both biparental and natural cucumber populations. Non-significant expression of CsGCN5 in multiple organs was found between the wild type and the mutant. CsGCN5 exhibited strong expression in the tendril of wild-type plants suggesting its important roles in growth and development of plant tendrils. The identification and characterization of the td-1 mutant from the present study provided a useful tool in understanding the molecular mechanisms of tendril organogenesis and investigation of novel functions of the histone acetyltransferase in cucumber.

Indexed as

Genes, RecessiveChromosome MappingCloning, MolecularCucumis sativusDNA, PlantGenes, PlantGenetic LinkageHistone AcetyltransferasesPhylogenyPolymorphism, Single NucleotideSequence Analysis, DNADNA, PlantHistone Acetyltransferases

Identifiers

PMID28466109
OpenAlexW2610412386

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.