Evidence map›Paper›PMID 28465712›Full record

ArticlePlant methods2017

A novel hairpin library-based approach to identify NBS-LRR genes required for effector-triggered hypersensitive response in

Cyril Brendolise, Mirco Montefiori, Romain Dinis, Nemo Peeters, Roy D Storey, Erik H Rikkerink

Open access · goldAbstract read
In one paragraph

Article in Plant methods, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
6.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Plant physiology · 2020
    Article
  10. Article
  11. Article
  12. Frontiers in plant science · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Cyril BrendoliseMt Albert Research Centre, The New Zealand Institute for Plant and Food Research Limited (PFR), 120 Mt Albert Road, Auckland, 1142 New Zealand.ORCID 0000-0001-8213-8094
Mirco MontefioriMt Albert Research Centre, The New Zealand Institute for Plant and Food Research Limited (PFR), 120 Mt Albert Road, Auckland, 1142 New Zealand.
Romain DinisINRA, Laboratoire des Interactions Plantes Micro-Organismes (LIPM), UMR441, CS52627, Chemin de Borde Rouge, 31326 Castanet-Tolosan, France.
Nemo PeetersINRA, Laboratoire des Interactions Plantes Micro-Organismes (LIPM), UMR441, CS52627, Chemin de Borde Rouge, 31326 Castanet-Tolosan, France.
Roy D StoreyTe Puke Research Centre, The New Zealand Institute for Plant and Food Research Limited (PFR), 412 No. 1 Road, RD 2, Te Puke, 3182 New Zealand.
Erik H RikkerinkMt Albert Research Centre, The New Zealand Institute for Plant and Food Research Limited (PFR), 120 Mt Albert Road, Auckland, 1142 New Zealand.
Plant & Food Research · NZLaboratoire des Interactions Plantes Micro-Organismes · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPTI and ETI are the two major defence mechanisms in plants. ETI is triggered by the detection of pathogen effectors, or their activity, in the plant cell and most of the time involves internal receptors known as resistance (R) genes. An increasing number of R genes responsible for recognition of specific effectors have been characterised over the years; however, methods to identify R genes are often challenging and cannot always be translated to crop plants.

resultsWe present a novel method to identify R genes responsible for the recognition of specific effectors that trigger a hypersensitive response (HR) in

conclusionWe present a novel approach combining bioinformatics, multiple-gene silencing and transient expression assay screening to rapidly identify one-to-one relationships between pathogen effectors and host R genes in

Indexed as

Effector screeningHypersensitive response (HR)Multiple gene silencingPlant/pathogen interactionResistance gene

Identifiers

PMID28465712
PMCPMC5408436
OpenAlexW2608766647

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.