Evidence map›Paper›PMID 28465412›Full record

ArticleScience signaling2017

Genome-wide identification and characterization of Notch transcription complex-binding sequence-paired sites in leukemia cells.

Eric Severson, Kelly L Arnett, Hongfang Wang, Chongzhi Zang, Len Taing, Hudan Liu, Warren S Pear, X Shirley Liu, Stephen C Blacklow, Jon C Aster

Abstract read
In one paragraph

Article in Science signaling, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Biophysics of Notch Signaling.Annual review of biophysics · 2021
    Review
  12. Genome-Wide Analysis IdentifiesFrontiers in cell and developmental biology · 2021
    Article
  13. Article
  14. eLife · 2020
    Article
  15. Article
  16. Article
  17. Notch pathway: a bistable inducer of biological noise?Cell communication and signaling : CCS · 2019
    Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Eric SeversonDepartment of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.ORCID http://orcid.org/0000-0003-4394-2412
Kelly L ArnettDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.ORCID http://orcid.org/0000-0001-5117-3647
Hongfang WangDepartment of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.ORCID http://orcid.org/0000-0002-1104-1540
Chongzhi ZangDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Harvard School of Public Health, Boston, MA 02114, USA.ORCID http://orcid.org/0000-0003-4812-3627
Len TaingDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Harvard School of Public Health, Boston, MA 02114, USA.
Hudan LiuDepartment of Pathology and Laboratory Medicine, Abramson Family Cancer Research Institute, Institute of Medicine and Engineering, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.
Warren S PearDepartment of Pathology and Laboratory Medicine, Abramson Family Cancer Research Institute, Institute of Medicine and Engineering, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID http://orcid.org/0000-0002-2624-0526
X Shirley LiuDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Harvard School of Public Health, Boston, MA 02114, USA.ORCID http://orcid.org/0000-0001-8588-1182
Stephen C BlacklowDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA. stephen_blacklow@hms.harvard.edu jaster@partners.org.ORCID http://orcid.org/0000-0002-6904-1981
Jon C AsterDepartment of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA. stephen_blacklow@hms.harvard.edu jaster@partners.org.ORCID http://orcid.org/0000-0002-1957-9070

Funding

Protein CoreP01CA119070 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI ASTER, JON C. · 2006 to 2016
$10.3M
Structure and Function in Notch SignalingR01CA092433 · NCI · HARVARD MEDICAL SCHOOL · PI BLACKLOW, STEPHEN C. · 2002 to 2016
$5.0M
NCI NIH HHS P01 CA119070NCI NIH HHS R01 CA092433
6 · The paper itself

Abstract

Notch transcription complexes (NTCs) drive target gene expression by binding to two distinct types of genomic response elements, NTC monomer-binding sites and sequence-paired sites (SPSs) that bind NTC dimers. SPSs are conserved and have been linked to the Notch responsiveness of a few genes. To assess the overall contribution of SPSs to Notch-dependent gene regulation, we determined the DNA sequence requirements for NTC dimerization using a fluorescence resonance energy transfer (FRET) assay and applied insights from these in vitro studies to Notch-"addicted" T cell acute lymphoblastic leukemia (T-ALL) cells. We found that SPSs contributed to the regulation of about a third of direct Notch target genes. Although originally described in promoters, SPSs are present mainly in long-range enhancers, including an enhancer containing a newly described SPS that regulates

Indexed as

Enhancer Elements, GeneticGene Expression Regulation, LeukemicGenome, HumanAnimalsGene Expression ProfilingHumansMicePrecursor T-Cell Lymphoblastic Leukemia-LymphomaPromoter Regions, GeneticProtein BindingReceptors, NotchSignal TransductionTranscription FactorsTumor Cells, CulturedReceptors, NotchTranscription Factors

Identifiers

PMID28465412
PMCPMC5931361

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.