Evidence map›Paper›PMID 28465105›Full record

ArticleBioorganic & medicinal chemistry letters2017

Optimization of a binding fragment targeting the "enlarged methionine pocket" leads to potent Trypanosoma brucei methionyl-tRNA synthetase inhibitors.

Wenlin Huang, Zhongsheng Zhang, Ranae M Ranade, J Robert Gillespie, Ximena Barros-Álvarez, Sharon A Creason, Sayaka Shibata, Christophe L M J Verlinde, Wim G J Hol, Frederick S Buckner and 1 more

Abstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. ExploringPharmaceuticals (Basel, Switzerland) · 2023
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Dual-targeted hit identification using pharmacophore screening.Journal of computer-aided molecular design · 2019
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Wenlin HuangDepartment of Biochemistry, University of Washington, Seattle, WA 98195, United States.
Zhongsheng ZhangDepartment of Biochemistry, University of Washington, Seattle, WA 98195, United States.
Ranae M RanadeDepartment of Medicine, Division of Allergy and Infectious Diseases, and the Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, WA 98109, United States.
J Robert GillespieDepartment of Medicine, Division of Allergy and Infectious Diseases, and the Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, WA 98109, United States.
Ximena Barros-ÁlvarezDepartment of Biochemistry, University of Washington, Seattle, WA 98195, United States; Laboratorio de Enzimología de Parásitos, Facultad de Ciencias, Universidad de los Andes, Mérida, Venezuela.
Sharon A CreasonDepartment of Medicine, Division of Allergy and Infectious Diseases, and the Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, WA 98109, United States.
Sayaka ShibataDepartment of Biochemistry, University of Washington, Seattle, WA 98195, United States.
Christophe L M J VerlindeDepartment of Biochemistry, University of Washington, Seattle, WA 98195, United States.
Wim G J HolDepartment of Biochemistry, University of Washington, Seattle, WA 98195, United States.
Frederick S BucknerDepartment of Medicine, Division of Allergy and Infectious Diseases, and the Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, WA 98109, United States. Electronic address: fbuckner@uw.edu.
Erkang FanDepartment of Biochemistry, University of Washington, Seattle, WA 98195, United States. Electronic address: erkang@uw.edu.

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Structure-based Optimization of T. brucei methionyl tRNA Synthetase InhibitorsR01AI097177 · NIAID · UNIVERSITY OF WASHINGTON · PI BUCKNER, FREDERICK SIMMONS, FAN, ERKANG · 2012 to 2019
$5.3M
Selective inhibition of tRNA synthetases from pathogenic protozoaR01AI084004 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2010 to 2014
$3.3M
NIAID NIH HHS R01 AI084004NIAID NIH HHS R01 AI097177NIGMS NIH HHS P41 GM103393
6 · The paper itself

Abstract

Potent inhibitors of Trypanosoma brucei methionyl-tRNA synthetase were previously designed using a structure-guided approach. Compounds 1 and 2 were the most active compounds in the cyclic and linear linker series, respectively. To further improve cellular potency, SAR investigation of a binding fragment targeting the "enlarged methionine pocket" (EMP) was performed. The optimization led to the identification of a 6,8-dichloro-tetrahydroquinoline ring as a favorable fragment to bind the EMP. Replacement of 3,5-dichloro-benzyl group (the EMP binding fragment) of inhibitor 2 using this tetrahydroquinoline fragment resulted in compound 13, that exhibited an EC

Indexed as

AnimalsBinding SitesBrainCell LineCell SurvivalDose-Response Relationship, DrugEnzyme InhibitorsHep G2 CellsHumansMethionineMethionine-tRNA LigaseMiceMolecular StructureStructure-Activity RelationshipTrypanosoma brucei bruceiEnzyme InhibitorsMethionineMethionine-tRNA LigaseHuman African trypanosomiasisMethionyl-tRNA synthetaseStructure-based designTrypanosoma brucei

Identifiers

PMID28465105
PMCPMC5542777

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.