Evidence map›Paper›PMID 28464932›Full record

ArticleBMC medical genetics2017

Interaction between FTO rs9939609 and the Native American-origin ABCA1 rs9282541 affects BMI in the admixed Mexican population.

Marisela Villalobos-Comparán, Bárbara Antuna-Puente, María Teresa Villarreal-Molina, Samuel Canizales-Quinteros, Rafael Velázquez-Cruz, Paola León-Mimila, Hugo Villamil-Ramírez, Juan Antonio González-Barrios, José Luis Merino-García, María Rocío Thompson-Bonilla and 10 more

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
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  13. Polymorphisms in Adipokines in Mexican Children with Obesity.International journal of endocrinology · 2019
    Article
  14. Relationship betweenExperimental and therapeutic medicine · 2018
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  15. Interaction analysis ofColombia medica (Cali, Colombia)
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 2 countries.

Marisela Villalobos-ComparánConsorcio Genómica Computacional, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Bárbara Antuna-PuenteLaboratorio de Genómica de Enfermedades Cardiovasculares, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
María Teresa Villarreal-MolinaLaboratorio de Genómica de Enfermedades Cardiovasculares, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Samuel Canizales-QuinterosUnidad de Genómica de Poblaciones Aplicada a la Salud, Facultad de Química, UNAM-INMEGEN, Mexico City, Mexico.
Rafael Velázquez-CruzLaboratorio de Genómica del Metabolismo Óseo, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Paola León-MimilaUnidad de Genómica de Poblaciones Aplicada a la Salud, Facultad de Química, UNAM-INMEGEN, Mexico City, Mexico.
Hugo Villamil-RamírezUnidad de Genómica de Poblaciones Aplicada a la Salud, Facultad de Química, UNAM-INMEGEN, Mexico City, Mexico.
Juan Antonio González-BarriosHospital Regional "Primero de Octubre", Instituto de Seguridad y Servicios Sociales de los Trabajadores del Estado, Mexico City, Mexico.
José Luis Merino-GarcíaHospital Regional "Primero de Octubre", Instituto de Seguridad y Servicios Sociales de los Trabajadores del Estado, Mexico City, Mexico.
María Rocío Thompson-BonillaHospital Regional "Primero de Octubre", Instituto de Seguridad y Servicios Sociales de los Trabajadores del Estado, Mexico City, Mexico.
Diego JarquinDepartment of Agronomy and Horticulture, University of Nebraska, Lincoln, NE, USA.
Osvaldo Erik Sánchez-HernándezHospital Regional "Lic. Adolfo López Mateos", Instituto de Seguridad y Servicios Sociales de los Trabajadores del Estado, Mexico City, Mexico.
Martha Eunice Rodríguez-ArellanoHospital Regional "Lic. Adolfo López Mateos", Instituto de Seguridad y Servicios Sociales de los Trabajadores del Estado, Mexico City, Mexico.
Carlos Posadas-RomeroDepartamento de Endocrinología, Instituto Nacional de Cardiología "Ignacio Chávez", Mexico City, Mexico.
Gilberto Vargas-AlarcónDepartamento de Biología Molecular, Instituto Nacional de Cardiologia "Ignacio Chávez", Mexico City, Mexico.
Francisco Campos-PérezClínica Integral de Cirugía para la Obesidad y Enfermedades Metabólicas, Hospital Rubén Leñero, Mexico City, Mexico.
Manuel QuiterioCentro de Investigación en Salud Poblacional, Instituto Nacional de Salud Pública, Cuernavaca, Morelos, Mexico.
Jorge Salmerón-CastroUnidad de Investigación Epidemiológica y en Servicios de Salud, Instituto Mexicano del Seguro Social, Cuernavaca, Morelos, Mexico.
Alessandra CarnevaleLaboratorio de Enfermedades Mendelianas, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Sandra Romero-HidalgoConsorcio Genómica Computacional, Instituto Nacional de Medicina Genómica, Mexico City, Mexico. sromero@inmegen.gob.mx.
National Institute of Genomic Medicine · MXInstitute for Social Security and Services for State Workers · MXInstituto Nacional de Cardiología · MXHospital Angeles Pedregal · MXInstituto Nacional de Salud Pública · MXMexican Social Security Institute · MXUniversity of Nebraska–Lincoln · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe aim of this study was to explore whether interactions between FTO rs9939609 and ABCA1 rs9282541 affect BMI and waist circumference (WC), and could explain previously reported population differences in FTO-obesity and FTO-BMI associations in the Mexican and European populations.

methodsA total of 3938 adults and 636 school-aged children from Central Mexico were genotyped for both polymorphisms. Subcutaneous and visceral adipose tissue biopsies from 22 class III obesity patients were analyzed for FTO and ABCA1 mRNA expression. Generalized linear models were used to test for associations and gene-gene interactions affecting BMI, WC and FTO expression.

resultsFTO and ABCA1 risk alleles were not individually associated with higher BMI or WC. However, in the absence of the ABCA1 risk allele, the FTO risk variant was significantly associated with higher BMI (P = 0.043) and marginally associated with higher WC (P = 0.067), as reported in Europeans. The gene-gene interaction affecting BMI and WC was statistically significant only in adults. FTO mRNA expression in subcutaneous abdominal adipose tissue according to ABCA1 genotype was consistent with these findings.

conclusionsThis is the first report showing evidence of FTO and ABCA1 gene variant interactions affecting BMI, which may explain previously reported population differences. Further studies are needed to confirm this interaction.

Indexed as

Body Mass IndexEpistasis, GeneticAdultAlpha-Ketoglutarate-Dependent Dioxygenase FTOATP Binding Cassette Transporter 1ChildFemaleHumansIndians, North AmericanMaleMexicoABCA1 protein, humanAlpha-Ketoglutarate-Dependent Dioxygenase FTOATP Binding Cassette Transporter 1FTO protein, humanBody mass indexFTO and ABCA1 variantsInteraction

Identifiers

PMID28464932
PMCPMC5414298
OpenAlexW2611753196

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.