Evidence map›Paper›PMID 28463978›Full record

ArticlePloS one2017

Molecular docking studies of 3-bromopyruvate and its derivatives to metabolic regulatory enzymes: Implication in designing of novel anticancer therapeutic strategies.

Saveg Yadav, Shrish Kumar Pandey, Vinay Kumar Singh, Yugal Goel, Ajay Kumar, Sukh Mahendra Singh

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 92 citations in OpenAlex.

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  12. Promising phytochemicals of traditional Indian herbal steam inhalation therapy to combat COVID-19 - An in silico study.Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association · 2021
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  14. Estimation of drug-likeness properties of GC-MS separated bioactive compounds in rare medicinalNetwork modeling and analysis in health informatics and bioinformatics · 2021
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  17. Designing a novel mRNA vaccine against SARS-CoV-2: An immunoinformatics approach.International journal of biological macromolecules · 2020
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Saveg YadavSchool of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh, India.
Shrish Kumar PandeySchool of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh, India.
Vinay Kumar SinghCentre for Bioinformatics, School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh, India.
Yugal GoelSchool of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh, India.
Ajay KumarDepartment of Zoology, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh, India.
Sukh Mahendra SinghSchool of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh, India.ORCID http://orcid.org/0000-0001-9524-8372
Banaras Hindu University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Altered metabolism is an emerging hallmark of cancer, as malignant cells display a mammoth up-regulation of enzymes responsible for steering their bioenergetic and biosynthetic machinery. Thus, the recent anticancer therapeutic strategies focus on the targeting of metabolic enzymes, which has led to the identification of specific metabolic inhibitors. One of such inhibitors is 3-bromopyruvate (3-BP), with broad spectrum of anticancer activity due to its ability to inhibit multiple metabolic enzymes. However, the molecular characterization of its binding to the wide spectrum of target enzymes remains largely elusive. Therefore, in the present study we undertook in silico investigations to decipher the molecular nature of the docking of 3-BP with key target enzymes of glycolysis and TCA cycle by PatchDock and YASARA docking tools. Additionally, derivatives of 3-BP, dibromopyruvate (DBPA) and propionic acid (PA), with reported biological activity, were also investigated for docking to important target metabolic enzymes of 3-BP, in order to predict their therapeutic efficacy versus that of 3-BP. A comparison of the docking scores with respect to 3-BP indicated that both of these derivatives display a better binding strength to metabolic enzymes. Further, analysis of the drug likeness of 3-BP, DBPA and PA by Lipinski filter, admetSAR and FAF Drug3 indicated that all of these agents showed desirable drug-like criteria. The outcome of this investigation sheds light on the molecular characteristics of the binding of 3-BP and its derivatives with metabolic enzymes and thus may significantly contribute in designing and optimizing therapeutic strategies against cancer by using these agents.

Indexed as

Antineoplastic AgentsCitric Acid CycleComputer SimulationEnzyme InhibitorsGlycolysisHumansLigandsMolecular Docking SimulationNeoplasmsPropionatesPyrrolesPyruvatesSuccinate Dehydrogenase4,5-dibromo-2-pyrrolic acidAntineoplastic AgentsbromopyruvateEnzyme InhibitorsLigandsPropionatespropionic acidPyrrolesPyruvatesSuccinate Dehydrogenase

Identifiers

PMID28463978
PMCPMC5413015
OpenAlexW2611815530

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.