Evidence map›Paper›PMID 28462777›Full record

ArticleeLife2017

Synthetically modified guide RNA and donor DNA are a versatile platform for CRISPR-Cas9 engineering.

Kunwoo Lee, Vanessa A Mackley, Anirudh Rao, Anthony T Chong, Mark A Dewitt, Jacob E Corn, Niren Murthy

Abstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Enrichment strategies to enhance genome editing.Journal of biomedical science · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Strategies for precise gene edits in mammalian cells.Molecular therapy. Nucleic acids · 2023
    Review
  15. TAxI-peptide targeted Cas12a ribonuclease protein nanoformulations increase genome editing in hippocampal neurons.Journal of controlled release : official journal of the Controlled Release Society · 2023
    Article
  16. Review
  17. Online Databases of Genome Editing in Cardiovascular and Metabolic Diseases.Advances in experimental medicine and biology · 2023
    Article
  18. Practical Application of the 3Rs in Rodent Transgenesis.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  19. Building Blocks of Artificial CRISPR-Based Systems beyond Nucleases.International journal of molecular sciences · 2022
    Review
  20. A Decade of CRISPR-Cas Gnome Editing inInternational journal of molecular sciences · 2022
    Review

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kunwoo LeeGenEdit Inc, Berkeley, United States.
Vanessa A MackleyGenEdit Inc, Berkeley, United States.ORCID 0000-0001-7734-2373
Anirudh RaoDepartment of Bioengineering, University of California, Berkeley, Berkeley, United States.
Anthony T ChongDepartment of Bioengineering, University of California, Berkeley, Berkeley, United States.
Mark A DewittDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Jacob E CornDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0002-7798-5309
Niren MurthyDepartment of Bioengineering, University of California, Berkeley, Berkeley, United States.ORCID 0000-0002-7815-7337

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chemical modification of the gRNA and donor DNA has great potential for improving the gene editing efficiency of Cas9 and Cpf1, but has not been investigated extensively. In this report, we demonstrate that the gRNAs of Cas9 and Cpf1, and donor DNA can be chemically modified at their terminal positions without losing activity. Moreover, we show that 5' fluorescently labeled donor DNA can be used as a marker to enrich HDR edited cells by a factor of two through cell sorting. In addition, we demonstrate that the gRNA and donor DNA can be directly conjugated together into one molecule, and show that this gRNA-donor DNA conjugate is three times better at transfecting cells and inducing HDR, with cationic polymers, than unconjugated gRNA and donor DNA. The tolerance of the gRNA and donor DNA to chemical modifications has the potential to enable new strategies for genome engineering.

Indexed as

CRISPR-Cas SystemsBacterial ProteinsCRISPR-Associated Protein 9CRISPR-Associated ProteinsDNAEndodeoxyribonucleasesEndonucleasesGene EditingRNA, Guide, CRISPR-Cas SystemsBacterial ProteinsCas12a proteinCas9 endonuclease Streptococcus pyogenesCRISPR-Associated Protein 9CRISPR-Associated ProteinsDNAEndodeoxyribonucleasesEndonucleasesRNA, Guide, CRISPR-Cas SystemschromosomesCRISPR/Cas9drug deliverygene editinggeneshuman biologymedicinenone

Identifiers

PMID28462777
PMCPMC5413346

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.