Evidence map›Paper›PMID 28461493›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Single-stranded nucleic acid elasticity arises from internal electrostatic tension.

David R Jacobson, Dustin B McIntosh, Mark J Stevens, Michael Rubinstein, Omar A Saleh

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
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  9. Review
  10. Switch-like compaction of poly(ADP-ribose) upon cation binding.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Article
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  14. Review
  15. Optical tweezers in single-molecule biophysics.Nature reviews. Methods primers · 2021
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Tuning the size, shape and structure of RNA nanoparticles for favorable cancer targeting and immunostimulation.Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

David R JacobsonDepartment of Physics, University of California, Santa Barbara, CA 93106.
Dustin B McIntoshDepartment of Physics, University of California, Santa Barbara, CA 93106.
Mark J StevensCenter for Integrated Nanotechnologies, Sandia National Laboratories, Albuquerque, NM 87185.
Michael RubinsteinDepartment of Chemistry, University of North Carolina, Chapel Hill, NC 27599.
Omar A SalehMaterials Department and Biomolecular Science and Engineering Program, University of California, Santa Barbara, CA 93016 saleh@engineering.ucsb.edu.ORCID 0000-0002-9197-4024

Funding

The Biophysics of Mucus Hydration and Adhesion/CohesionP01HL108808 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PEDEN, DAVID B. · 2012 to 2021
$23.9M
Synthesis of Effective and Safe Mucolytics for Pulmonary DiseaseUH3HL123645 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BOUCHER, RICHARD CHARLES · 2016 to 2018
$4.6M
Synthesis of Effective and Safe Mucolytics for Pulmonary DiseaseUH2HL123645 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BOUCHER, RICHARD CHARLES · 2014 to 2015
$2.9M
NHLBI NIH HHS P01 HL108808NHLBI NIH HHS UH2 HL123645NHLBI NIH HHS UH3 HL123645
6 · The paper itself

Abstract

Understanding of the conformational ensemble of flexible polyelectrolytes, such as single-stranded nucleic acids (ssNAs), is complicated by the interplay of chain backbone entropy and salt-dependent electrostatic repulsions. Molecular elasticity measurements are sensitive probes of the statistical conformation of polymers and have elucidated ssNA conformation at low force, where electrostatic repulsion leads to a strong excluded volume effect, and at high force, where details of the backbone structure become important. Here, we report measurements of ssDNA and ssRNA elasticity in the intermediate-force regime, corresponding to 5- to 100-pN forces and 50-85% extension. These data are explained by a modified wormlike chain model incorporating an internal electrostatic tension. Fits to the elastic data show that the internal tension decreases with salt, from [Formula: see text]5 pN under 5 mM ionic strength to near zero at 1 M. This decrease is quantitatively described by an analytical model of electrostatic screening that ascribes to the polymer an effective charge density that is independent of force and salt. Our results thus connect microscopic chain physics to elasticity and structure at intermediate scales and provide a framework for understanding flexible polyelectrolyte elasticity across a broad range of relative extensions.

Indexed as

Models, ChemicalStatic ElectricityDNA, Single-StrandedPoly UDNA, Single-StrandedPoly Uelectrostaticsflexible polyelectrolytesforce spectroscopysingle-stranded nucleic acids

Identifiers

PMID28461493
PMCPMC5441769

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.